Evidence map›Paper›PMID 19696023›Full record

ArticleThe Journal of biological chemistry2009

Prolyl 4-hydroxylation of alpha-fibrinogen: a novel protein modification revealed by plasma proteomics.

Masaya Ono, Junichi Matsubara, Kazufumi Honda, Tomohiro Sakuma, Tomoyo Hashiguchi, Hiroshi Nose, Shoji Nakamori, Takuji Okusaka, Tomoo Kosuge, Naohiro Sata and 14 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 52 citations in OpenAlex.

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  4. Targeted proteomics for cancer biomarker verification and validation.Cancer biomarkers : section A of Disease markers · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 3 countries.

Masaya OnoChemotherapy Division, National Cancer Center Research Institute, 5-1-1 Tsukiji, Chuo-ku, Tokyo 104-0045, Japan. masono@ncc.go.jp
Junichi Matsubara
Kazufumi Honda
Tomohiro Sakuma
Tomoyo Hashiguchi
Hiroshi Nose
Shoji Nakamori
Takuji Okusaka
Tomoo Kosuge
Naohiro Sata
Hideo Nagai
Tatsuya Ioka
Sachiko Tanaka
Akihiko Tsuchida
Tatsuya Aoki
Masashi Shimahara
Yohichi Yasunami
Takao Itoi
Fuminori Moriyasu
Ayako Negishi
Hideya Kuwabara
Ayako Shoji
Setsuo Hirohashi
Tesshi Yamada
National Cancer Research Institute · GBTokyo Medical University · JPBioscience Research · USJichi Medical University · JPOsaka Medical Center for Cancer and Cardiovascular Diseases · JPFukuoka University · JPNational Cancer Center · USOsaka Medical and Pharmaceutical University · JPOsaka National Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasma proteome analysis requires sufficient power to compare numerous samples and detect changes in protein modification, because the protein content of human samples varies significantly among individuals, and many plasma proteins undergo changes in the bloodstream. A label-free proteomics platform developed in our laboratory, termed "Two-Dimensional Image Converted Analysis of Liquid chromatography and mass spectrometry (2DICAL)," is capable of these tasks. Here, we describe successful detection of novel prolyl hydroxylation of alpha-fibrinogen using 2DICAL, based on comparison of plasma samples of 38 pancreatic cancer patients and 39 healthy subjects. Using a newly generated monoclonal antibody 11A5, we confirmed the increase in prolyl-hydroxylated alpha-fibrinogen plasma levels and identified prolyl 4-hydroxylase A1 as a key enzyme for the modification. Competitive enzyme-linked immunosorbent assay of 685 blood samples revealed dynamic changes in prolyl-hydroxylated alpha-fibrinogen plasma level depending on clinical status. Prolyl-hydroxylated alpha-fibrinogen is presumably controlled by multiple biological mechanisms, which remain to be clarified in future studies.

Indexed as

AdenocarcinomaBlood ProteinsCase-Control StudiesCell Line, TumorChromatography, LiquidEnzyme-Linked Immunosorbent AssayFibrinogenHumansImage Processing, Computer-AssistedMass SpectrometryPancreatic NeoplasmsProcollagen-Proline DioxygenaseProteomeProteomicsRNA InterferenceBlood ProteinsFibrinogenProcollagen-Proline DioxygenaseProteome

Identifiers

PMID19696023
PMCPMC2781450
OpenAlexW1983828092

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.