Evidence map›Paper›PMID 19692567›Full record

ArticleMolecular biology of the cell2009

AP180-mediated trafficking of Vamp7B limits homotypic fusion of Dictyostelium contractile vacuoles.

Yujia Wen, Irene Stavrou, Kirill Bersuker, Rebecca J Brady, Arturo De Lozanne, Theresa J O'Halloran

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  4. Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins inProceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yujia WenDepartment of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Irene Stavrou
Kirill Bersuker
Rebecca J Brady
Arturo De Lozanne
Theresa J O'Halloran
The University of Texas at Austin · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
MOLECULAR ANALYSIS OF CYTOKINESIS IN DICTYOSTELIUMR01GM048745 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI DE LOZANNE, ARTURO · 1998 to 2006
$1.9M
INTRACELLULAR ROLE OF CLATHRIN AND ITS REGULATIONR01GM048625 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI O'HALLORAN, THERESA JOYCE · 1994 to 2007
$1.8M
MOLECULAR ANALYSIS OF CYTOKINESIS IN DICTYOSTELIUMR29GM048745 · NIGMS · DUKE UNIVERSITY · PI DE LOZANNE, ARTURO · 1993 to 1997
–
NHGRI NIH HHS T32 HG000044NIGMS NIH HHS GM48745NIGMS NIH HHS R01 GM048625NIGMS NIH HHS R01 GM048745
6 · The paper itself

Abstract

Clathrin-coated vesicles play an established role in endocytosis from the plasma membrane, but they are also found on internal organelles. We examined the composition of clathrin-coated vesicles on an internal organelle responsible for osmoregulation, the Dictyostelium discoideum contractile vacuole. Clathrin puncta on contractile vacuoles contained multiple accessory proteins typical of plasma membrane-coated pits, including AP2, AP180, and epsin, but not Hip1r. To examine how these clathrin accessory proteins influenced the contractile vacuole, we generated cell lines that carried single and double gene knockouts in the same genetic background. Single or double mutants that lacked AP180 or AP2 exhibited abnormally large contractile vacuoles. The enlarged contractile vacuoles in AP180-null mutants formed because of excessive homotypic fusion among contractile vacuoles. The SNARE protein Vamp7B was mislocalized and enriched on the contractile vacuoles of AP180-null mutants. In vitro assays revealed that AP180 interacted with the cytoplasmic domain of Vamp7B. We propose that AP180 directs Vamp7B into clathrin-coated vesicles on contractile vacuoles, creating an efficient mechanism for regulating the internal distribution of fusion-competent SNARE proteins and limiting homotypic fusions among contractile vacuoles. Dictyostelium contractile vacuoles offer a valuable system to study clathrin-coated vesicles on internal organelles within eukaryotic cells.

Indexed as

Adaptor Proteins, Vesicular TransportAnimalsClathrin-Coated VesiclesDictyosteliumEndosomesGenes, ReporterImage Processing, Computer-AssistedMembrane FusionMonomeric Clathrin Assembly ProteinsProtein Interaction MappingProtein TransportProtozoan ProteinsRecombinant Fusion ProteinsSNARE ProteinsVacuolesAdaptor Proteins, Vesicular Transportclathrin assembly protein AP180Monomeric Clathrin Assembly ProteinsProtozoan ProteinsRecombinant Fusion ProteinsSNARE Proteins

Identifiers

PMID19692567
PMCPMC2762145
OpenAlexW2163891813

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.