Evidence map›Paper›PMID 19692537›Full record

ArticlePlant physiology2009

An Rrf2-type transcriptional regulator is required for expression of psaAB genes in the cyanobacterium Synechocystis sp. PCC 6803.

Takafumi Midorikawa, Koji Matsumoto, Rei Narikawa, Masahiko Ikeuchi

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Cyanobacteriochrome CcaS regulates phycoerythrin accumulation in Nostoc punctiforme, a group II chromatic adapter.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Takafumi MidorikawaDepartment of Biological Science, Graduate School of Sciences, University of Tokyo, Tokyo 153-8902, Japan.
Koji Matsumoto
Rei Narikawa
Masahiko Ikeuchi
The University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosynthetic organisms must regulate photosystem stoichiometry (photosystem I-to-photosystem II ratio) under various light conditions. Transcriptional regulation of the psaAB genes is a critical process for this photoacclimation in cyanobacteria. In the course of our screening of transcriptional regulators in the cyanobacterium Synechocystis sp. PCC 6803, we found that chlorophyll accumulation was impaired in an Rrf2-type regulator Slr0846 mutant. DNA microarray and primer extension analyses showed that the expression of psaAB genes was markedly decreased in the mutant. Consistently, the mutant exhibited lower photosystem I-to-photosystem II ratio under normal light conditions, suggestive of decreased accumulation of the photosystem I reaction center. Gel-shift assay confirmed that the Slr0846 protein bound to a far upstream promoter region of psaAB. These phenotypes of the mutant varied substantially with light conditions. These results suggest that Slr0846 is a novel transcriptional regulator for optimal expression of psaAB.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialTranscription, GeneticBacterial ProteinsChlorophyllDNA PrimersElectrophoretic Mobility Shift AssayGene Expression ProfilingLightMutationOligonucleotide Array Sequence AnalysisPhenotypePhotosystem II Protein ComplexPhotosystem I Protein ComplexPhycocyaninPhylogenyBacterial ProteinsChlorophyllDNA PrimersPhotosystem II Protein ComplexPhotosystem I Protein ComplexPhycocyaninRecombinant Proteins

Identifiers

PMID19692537
PMCPMC2754614
OpenAlexW1978203860

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.