ArticlePlant physiology2009
Gene content and virtual gene order of barley chromosome 1H.
Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed.
- Epigenetics of wheat-rust interaction: an update.Planta · 2022Review
- Flow karyotyping of wheat-Frontiers in plant science · 2022Article
- Development of DNA Markers From Physically Mapped Loci inFrontiers in plant science · 2021Article
- Dissecting the Complex Genome of Crested Wheatgrass by Chromosome Flow Sorting.The plant genome · 2019Article
- Genomic approaches for studying crop evolution.Genome biology · 2018Review
- The gene conferring susceptibility to spot blotch caused by Cochliobolus sativus is located at the Mla locus in barley cultivar Bowman.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- An efficient approach for the development of genome-specific markers in allohexaploid wheat (Triticum aestivum L.) and its application in the construction of high-density linkage maps of the D genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Article
- Molecular cytogenetic and morphological characterization of two wheat-barley translocation lines.PloS one · 2018Article
- Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order.BMC genomics · 2017Article
- QTLs for earliness and yield-forming traits in the Lubuski × CamB barley RIL population under various water regimes.Journal of applied genetics · 2017Article
- Toward Genomics-Based Breeding in C3 Cool-Season Perennial Grasses.Frontiers in plant science · 2017Review
- Rapid gene isolation in barley and wheat by mutant chromosome sequencing.Genome biology · 2016Article
- Molecular and genetic characterization of barley mutants and genetic mapping of mutant rpr2 required for Rpg1-mediated resistance against stem rust.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Joint Transcriptomic and Metabolomic Analyses Reveal Changes in the Primary Metabolism and Imbalances in the Subgenome Orchestration in the Bread Wheat Molecular Response to Fusarium graminearum.G3 (Bethesda, Md.) · 2015Article
- Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.BMC genomics · 2015Article
- Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes.BMC genomics · 2015Article
- High-throughput physical map anchoring via BAC-pool sequencing.BMC plant biology · 2015Article
- New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.Plant science : an international journal of experimental plant biology · 2015Article
6 more citing papers are in PubMed but not listed here.
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Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chromosome 1H (approximately 622 Mb) of barley (Hordeum vulgare) was isolated by flow sorting and shotgun sequenced by GSFLX pyrosequencing to 1.3-fold coverage. Fluorescence in situ hybridization and stringent sequence comparison against genetically mapped barley genes revealed 95% purity of the sorted chromosome 1H fraction. Sequence comparison against the reference genomes of rice (Oryza sativa) and sorghum (Sorghum bicolor) and against wheat (Triticum aestivum) and barley expressed sequence tag datasets led to the estimation of 4,600 to 5,800 genes on chromosome 1H, and 38,000 to 48,000 genes in the whole barley genome. Conserved gene content between chromosome 1H and known syntenic regions of rice chromosomes 5 and 10, and of sorghum chromosomes 1 and 9 was detected on a per gene resolution. Informed by the syntenic relationships between the two reference genomes, genic barley sequence reads were integrated and ordered to deduce a virtual gene map of barley chromosome 1H. We demonstrate that synteny-based analysis of low-pass shotgun sequenced flow-sorted Triticeae chromosomes can deliver linearly ordered high-resolution gene inventories of individual chromosomes, which complement extensive Triticeae expressed sequence tag datasets. Thus, integration of genomic, transcriptomic, and synteny-derived information represents a major step toward developing reference sequences of chromosomes and complete genomes of the most important plant tribe for mankind.
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