Evidence map›Paper›PMID 19691422›Full record

ArticleJournal of neurotrauma2010

Proteomic and phosphoproteomic analyses of the soluble fraction following acute spinal cord contusion in rats.

Anshu Chen, Melanie L McEwen, Shixin Sun, Rangaswamyrao Ravikumar, Joe E Springer

Abstract read
In one paragraph

Article in Journal of neurotrauma, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anshu ChenUniversity of Kentucky, Department of Physical Medicine and Rehabilitation, Lexington, Kentucky 40536-0509, USA.
Melanie L McEwen
Shixin Sun
Rangaswamyrao Ravikumar
Joe E Springer
University of Kentucky · USFramingham State University · US

Funding

COX-2 Pathophysiology in Spinal Cord InjuryR01NS046380 · NINDS · UNIVERSITY OF KENTUCKY · PI SPRINGER, JOE E · 2004 to 2007
$1.2M
NINDS NIH HHS NS46380
6 · The paper itself

Abstract

Traumatic spinal cord injury (SCI) causes marked neuropathological changes in the spinal cord, resulting in limited functional recovery. Currently, there are no effective treatments, and the mechanisms underlying these neuropathological changes are not completely understood. In this study, two-dimensional gel electrophoresis coupled with mass spectrometry was used to investigate injury-related changes in the abundance (SYPRO Ruby stain) and phosphorylation (Pro-Q Diamond stain) of proteins from the soluble fraction of the lesion epicenter at 24 h following SCI. Over 1500 SYPRO Ruby-stained spots and 100 Pro-Q Diamond-stained spots were examined. We identified 26 unique proteins within 38 gel spots that differentially changed in abundance, phosphorylation, or both in response to SCI. Protein redundancies among the gel spots were likely due to differences in proteolysis, post-translational modifications, and the existence of isoforms. The proteins affected were blood-related proteins, heat-shock proteins, glycolytic enzymes, antioxidants, and proteins that function in cell structure, cell signaling, DNA damage, and protein degradation. These protein changes post injury may suggest additional avenues of investigation into the underlying molecular mechanisms responsible for the pathophysiological consequences of SCI.

Indexed as

AnimalsDimethylpolysiloxanesDisease Models, AnimalElectrophoresis, Gel, Two-DimensionalEnergy MetabolismFemaleGlycerolHemorrhageMass SpectrometryNerve DegenerationNerve Tissue ProteinsOrganometallic CompoundsPhosphoproteinsPhosphorylationProteomicsRatsDimethylpolysiloxanesGlycerolNerve Tissue ProteinsOrganometallic CompoundsPhosphoproteinsPro-Q aerosol foamSypro Ruby

Identifiers

PMID19691422
PMCPMC2864456
OpenAlexW2039501012

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.