Evidence map›Paper›PMID 19690046›Full record

ArticlePhysiological genomics2009

Evidence of MyomiR network regulation of beta-myosin heavy chain gene expression during skeletal muscle atrophy.

John J McCarthy, Karyn A Esser, Charlotte A Peterson, Esther E Dupont-Versteegden

Abstract read
In one paragraph

Article in Physiological genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 1 synthesis or guideline pooled it, 211 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Article
  6. Review
  7. Review
  8. Epigenetics of Skeletal Muscle Atrophy.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Disuse-Induced Muscle Fatigue: Facts and Assumptions.International journal of molecular sciences · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Contribution of skeletal muscle-specific microRNA-133b to insulin resistance in heart failure.American journal of physiology. Heart and circulatory physiology · 2023
    Article
  16. Review
  17. MicroRNAs as the Sentinels of Redox and Hypertrophic Signalling.International journal of molecular sciences · 2022
    Review
  18. Review
  19. Article
  20. Extracellular vesicle-mediated bidirectional communication between heart and other organs.American journal of physiology. Heart and circulatory physiology · 2022
    Review

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

John J McCarthyDepartment of Physiology, College Health Sciences, University of Kentucky, Lexington, Kentucky 40536-0298, USA. jjmcca2@uky.edu
Karyn A Esser
Charlotte A Peterson
Esther E Dupont-Versteegden
Czech Academy of Sciences, Institute of Physiology · CZUniversity of Kentucky · US

Funding

SKELETAL MUSCLE HYPERTROPHY AND INTRACELLULAR SIGNALINGR01AR045617 · NIAMS · UNIVERSITY OF KENTUCKY · PI ESSER, KARYN A · 1999 to 2011
$2.9M
Muscle and Bone Maintenance in Hindlimb Suspended RatsR01AR047577 · NIAMS · UNIV OF ARKANSAS FOR MED SCIS · PI PETERSON, CHARLOTTE A. · 2002 to 2006
$1.8M
INTEGRATED STUDY OF MUSCULOSKELETAL LOSS AND RESTORATIONR01AG028925 · NIA · UNIVERSITY OF KENTUCKY · PI DUPONT-VERSTEEGDEN, ESTHER E · 2006 to 2010
$1.4M
Circadian Regulation of Myod1 TranscriptionR03AR053641 · NIAMS · UNIVERSITY OF KENTUCKY · PI MCCARTHY, JOHN JOSEPH · 2007 to 2009
$217k
NIAMS NIH HHS AR-053641NIAMS NIH HHS AR-45617NIAMS NIH HHS AR-47577NIAMS NIH HHS R01 AR045617NIA NIH HHS AG-028925
6 · The paper itself

Abstract

There is a growing recognition that noncoding RNAs (ncRNA) play an important role in the regulation of gene expression. A class of small (19-22 nt) ncRNAs, known as microRNAs (miRs), have received a great deal of attention lately because of their ability to repress gene expression through a unique posttranscriptional 3'-untranslated region (UTR) mechanism. The objectives of the current study were to identify miRs expressed in the rat soleus muscle and determine if their expression was changed in response to hindlimb suspension. Comprehensive profiling revealed 151 miRs were expressed in the soleus muscle and expression of 18 miRs were significantly (P < 0.01) changed after 2 and/or 7 days of hindlimb suspension. The significant decrease (16%) in expression of muscle-specific miR-499 in response to hindlimb suspension was confirmed by RT-PCR and suggested activation of the recently proposed miR encoded by myosin gene (MyomiR) network during atrophy. Further analysis of soleus muscle subjected to hindlimb suspension for 28 days provided evidence consistent with MyomiR network repression of beta-myosin heavy chain gene (beta-MHC) expression. The significant downregulation of network components miR-499 and miR-208b by 40 and 60%, respectively, was associated with increased expression of Sox6 (2.2-fold) and Purbeta (23%), predicted target genes of miR-499 and known repressors of beta-MHC expression. A Sox6 3'-UTR reporter gene confirmed Sox6 is a target gene of miR-499. These results further expand the role of miRs in adult skeletal muscle and are consistent with a model in which the MyomiR network regulates slow myosin expression during muscle atrophy.

Indexed as

3' Untranslated RegionsAnalysis of VarianceAnimalsCluster AnalysisGene Expression ProfilingGene Expression RegulationGenetic Predisposition to DiseaseHindlimb SuspensionLuciferasesMaleMiceMicroRNAsMuscle, SkeletalMuscular AtrophyMyosin Heavy ChainsNIH 3T3 Cells3' Untranslated RegionsLuciferasesMicroRNAsMyosin Heavy ChainsSox6 protein, mouseSOXD Transcription Factors

Identifiers

PMID19690046
PMCPMC2789671
OpenAlexW2032467930

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.