Evidence map›Paper›PMID 19687295›Full record

ArticleMolecular and cellular biology2009

Drosophila suppressor of sable protein [Su(s)] promotes degradation of aberrant and transposon-derived RNAs.

Yung-Shu Kuan, Paul Brewer-Jensen, Wen-Li Bai, Cedric Hunter, Carrie B Wilson, Sarah Bass, John Abernethy, James S Wing, Lillie L Searles

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Premature transcription termination complex proteins PCF11 and WDR82 silence HIV-1 expression in latently infected cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. RNA Exosomes and Their Cofactors.Methods in molecular biology (Clifton, N.J.) · 2020
    Review
  10. Article
  11. Patterns of positive selection in seven ant genomes.Molecular biology and evolution · 2014
    Article
  12. mRNA quality control goes transcriptional.Biochemical Society transactions · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yung-Shu KuanDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599-3280, USA.
Paul Brewer-Jensen
Wen-Li Bai
Cedric Hunter
Carrie B Wilson
Sarah Bass
John Abernethy
James S Wing
Lillie L Searles
University of North Carolina at Chapel Hill · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA-binding proteins act at various stages of gene expression to regulate and fine-tune patterns of mRNA accumulation. One protein in this class is Drosophila Su(s), a nuclear protein that has been previously shown to inhibit the accumulation of mutant transcripts by an unknown mechanism. Here, we have identified several additional RNAs that are downregulated by Su(s). These Su(s) targets include cryptic wild-type transcripts from the developmentally regulated Sgs4 and ng1 genes, noncoding RNAs derived from tandemly repeated alphabeta/alphagamma elements within an Hsp70 locus, and aberrant transcripts induced by Hsp70 promoter transgenes inserted at ectopic sites. We used the alphabeta RNAs to investigate the mechanism of Su(s) function and obtained evidence that these transcripts are degraded by the nuclear exosome and that Su(s) promotes this process. Furthermore, we showed that the RNA binding domains of Su(s) are important for this effect and mapped the sequences involved to a 267-nucleotide region of an alphabeta element. Taken together, these results suggest that Su(s) binds to certain nascent transcripts and stimulates their degradation by the nuclear exosome.

Indexed as

AnimalsBase SequenceChromosomesDrosophila melanogasterDrosophila ProteinsGlue Proteins, DrosophilaHot TemperatureHSP70 Heat-Shock ProteinsMolecular Sequence DataRNARNA-Binding ProteinsRNA Polymerase IISalivary Proteins and PeptidesDrosophila ProteinsGlue Proteins, DrosophilaHSP70 Heat-Shock Proteinsng1 protein, DrosophilaRNARNA-Binding ProteinsRNA Polymerase IISalivary Proteins and PeptidesSgs4 protein, Drosophilasu(sable) protein, Drosophila

Identifiers

PMID19687295
PMCPMC2756875
OpenAlexW2107540731

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.