Evidence map›Paper›PMID 19684093›Full record

ArticleExperimental physiology2009

The CAAT-binding transcription factor 1/nuclear factor 1 binding site is important in beta-myosin heavy chain antisense promoter regulation in rats.

Julia M Giger, Paul W Bodell, Kenneth M Baldwin, Fadia Haddad

Open access · bronzeAbstract read
In one paragraph

Article in Experimental physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Julia M GigerDepartment of Physiology and Biophysics, University of California, Irvine, D-346, Medical Sciences Building I, Irvine, CA 92697, USA. jmeehan@uci.edu
Paul W Bodell
Kenneth M Baldwin
Fadia Haddad
University of California, Irvine · USUniversity of California, Irvine Medical Center · US

Funding

Epigenetic regulation of cardiac MHC gene locusR01HL073473 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALDWIN, KENNETH M. · 2003 to 2011
$3.6M
NHLBI NIH HHS HL-073473NHLBI NIH HHS R01 HL073473
6 · The paper itself

Abstract

The rat heart expresses two myosin heavy chain (MHC) isoforms, beta and alpha; these genes are arranged in tandem on the same chromosome. We have reported that an antisense (AS) beta RNA starts in the intergenic (IG) region between beta and alpha genes and extends to overlap the beta gene. We propose that in adult rats, both the alpha sense and IG betaAS RNA expression are activated by an IG bidirectional promoter and that the transcription of betaAS RNA interferes with the sense beta, resulting in low levels of beta mRNA and high levels of alpha, a phenotype seen in a typical rat heart. A previous report examined the activity of the betaAS promoter and showed that a 559 bp fragment of the betaAS promoter (-2285 to -1726; relative to alphaMHC gene start site) injected into rat ventricle was activated in control heart, and decreased significantly in response to hypothyroidism (propylthiouracil induced) and diabetes (streptozotocin induced) and increased in hyperthyroid rats (T(3) induced), similar in pattern to the endogenous betaAS RNA. In the present paper, we demonstrate with electrophoretic mobility shift analyses that ventricular nuclear proteins are interacting with a nuclear factor 1/CAAT-binding transcription factor 1 (NF1/CTF1) binding site, and a supershift assay indicates that the protein binding at this site is antigenetically related to the CTF1/NF1 factor. Moreover, a mutation of the CTF1/NF1 site within the 559 bp promoter region nearly abolished promoter activity in vivo in control, STZ- and PTU-treated rats. Based on these findings, we conclude that the NF1 site is critical to betaAS promoter regulation.

Indexed as

AnimalsBase SequenceBinding SitesDiabetes Mellitus, ExperimentalFemaleHyperthyroidismHypothyroidismMolecular Sequence DataMyosin Heavy ChainsNFI Transcription FactorsPromoter Regions, GeneticRatsRats, Sprague-DawleyRNA, AntisenseSpecies SpecificityThyroid HormonesMyosin Heavy ChainsNFI Transcription FactorsRNA, AntisenseThyroid Hormonestranscription factor nuclear factor 1Ventricular Myosins

Identifiers

PMID19684093
PMCPMC4792187
OpenAlexW2147026568

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.