Evidence map›Paper›PMID 19684064›Full record

ArticleMicrobiology (Reading, England)2009

Identification and functional characterization of the iron-dependent regulator (IdeR) of Mycobacterium avium subsp. paratuberculosis.

Harish K Janagama, T M A Senthilkumar, John P Bannantine, G Marcela Rodriguez, Issar Smith, Michael L Paustian, Jeffery A McGarvey, Srinand Sreevatsan

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
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  11. Elucidating the Regulon of a FurFrontiers in microbiology · 2020
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Harish K JanagamaDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, USA.
T M A SenthilkumarDepartment of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN, USA.
John P BannantineNational Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Ames, IA, USA.
G Marcela RodriguezPHRI, UMNDJ-New Jersey Medical School, Newark, NJ, USA.
Issar SmithPHRI, UMNDJ-New Jersey Medical School, Newark, NJ, USA.
Michael L PaustianNational Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Ames, IA, USA.
Jeffery A McGarveyFoodborne Contaminants Research Unit, Agricultural Research Service, United States Department of Agriculture, Albany, CA, USA.
Srinand SreevatsanDepartment of Veterinary Biomedical Sciences, University of Minnesota, Saint Paul, MN, USA.
University of Minnesota · USUnited States Department of Agriculture · USNational Animal Disease Center · USRutgers New Jersey Medical SchoolRutgers, The State University of New Jersey · US

Funding

M TUBERCULOSIS SURVIVAL AND GROWTH IN VIVOR01AI044856 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI RODRIGUEZ, GLORIA MARCELA, SMITH, ISSAR · 1999 to 2014
$6.8M
Mechanisms and regulation of Mycobacterium tuberculosis iron acquisitionR56AI044856 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI RODRIGUEZ, GLORIA MARCELA, SMITH, ISSAR · 2009 to 2009
$585k
NIAID NIH HHS AI 44856NIAID NIH HHS R01 AI044856NIAID NIH HHS R56 AI044856
6 · The paper itself

Abstract

Mycobacterium avium subspecies paratuberculosis (MAP), the causative agent of Johne's disease in cattle and sheep, has unique iron requirements in that it is mycobactin-dependent for cultivation in vitro. The iron-dependent regulator (IdeR) is a well-characterized global regulator responsible for maintaining iron homeostasis in Mycobacterium tuberculosis (MTB). We identified an orthologous segment in the MAP genome, MAP2827, with >93 % amino acid identity to MTB IdeR. Electrophoretic mobility shift assays and DNase protection assays confirmed that MAP2827 binds the 19 bp consensus motif (iron box) on the MAP genome. Sequencing of MAP2827 from multiple isolates revealed a non-synonymous change (R91G) exclusive to sheep strains. Reporter gene assays and quantitative real-time RT-PCR assays in two diverse MAP strains and in an ideR deletion mutant of M. smegmatis (mc(2)155) suggested that both sheep MAP IdeR (sIdeR) and cattle MAP IdeR (cIdeR) repress mbtB transcription at high iron concentrations and relieve repression at low iron concentrations. On the other hand, bfrA (an iron storage gene) was upregulated by cIdeR when presented with MTB or the cattle MAP bfrA promoter, and was downregulated by sIdeR in the presence of MTB, or sheep or cattle MAP bfrA promoters, at high iron concentrations. The differential iron regulatory mechanisms between IdeR-regulated genes across strains may contribute to the differential growth or pathogenic characteristics of sheep and cattle MAP strains. Taken together, our study provides a possible reason for mycobactin dependency and suggests strong implications in the differential iron acquisition and storage mechanisms in MAP.

Indexed as

AnimalsBacterial ProteinsBase SequenceCattleDNA, BacterialDNA FootprintingElectrophoretic Mobility Shift AssayGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialIronMolecular Sequence DataMycobacterium avium subsp. paratuberculosisPromoter Regions, GeneticRepressor ProteinsSheepBacterial ProteinsDNA, BacterialIronRepressor Proteins

Identifiers

PMID19684064
PMCPMC2888127
OpenAlexW2165123076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.