Evidence map›Paper›PMID 19684020›Full record

ReviewThe Journal of biological chemistry2009

Biochemical basis of immunological and retroviral responses to DNA-targeted cytosine deamination by activation-induced cytidine deaminase and APOBEC3G.

Linda Chelico, Phuong Pham, John Petruska, Myron F Goodman

Open access · hybridAbstract readReview
In one paragraph

Review in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. AID and Apobec3G haphazard deamination and mutational diversity.Cellular and molecular life sciences : CMLS · 2013
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Linda ChelicoDepartment of Biological Sciences, Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089-2910.
Phuong PhamDepartment of Biological Sciences, Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089-2910.
John PetruskaDepartment of Biological Sciences, Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089-2910.
Myron F GoodmanDepartment of Biological Sciences, Molecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089-2910. Electronic address: mgoodman@usc.edu.
University of Southern California · US

Funding

Biochemical Basis of Somatic HypermutationR01ES013192 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2004 to 2013
$3.7M
ERROR CORRECTION IN DNA SYNTHESIS--A BIOCHEMICAL STUDYR37GM021422 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2000 to 2009
$3.5M
Biochemical Basis of Somatic HypermutationR56ES013192 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2015 to 2015
$150k
NIEHS NIH HHS ES013192NIEHS NIH HHS R01 ES013192NIEHS NIH HHS R56 ES013192NIGMS NIH HHS R37 GM021422NIGMS NIH HHS R37GM21422
6 · The paper itself

Abstract

Activation-induced cytidine deaminase (AID) and APOBEC3G catalyze deamination of cytosine to uracil on single-stranded DNA, thereby setting in motion a regulated hypermutagenic process essential for human well-being. However, if regulation fails, havoc ensues. AID plays a central role in the synthesis of high affinity antibodies, and APOBEC3G inactivates human immunodeficiency virus-1. This minireview highlights biochemical and structural properties of AID and APOBEC3G, showing how studies using the purified enzymes provide valuable insight into the considerably more complex biology governing antibody generation and human immunodeficiency virus inactivation.

Indexed as

RetroviridaeAICDA (Activation-Induced Cytidine Deaminase)AnimalsAPOBEC-3G DeaminaseBase Pair MismatchCytidine DeaminaseCytosineDNA, Single-StrandedHIV-1HumansImmunoglobulinsModels, MolecularProtein Structure, QuaternaryProtein Structure, TertiaryProtein SubunitsSomatic Hypermutation, ImmunoglobulinAICDA (Activation-Induced Cytidine Deaminase)APOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseCytosineDNA, Single-StrandedImmunoglobulinsProtein SubunitsUracil

Identifiers

PMID19684020
PMCPMC2788826
OpenAlexW2020993323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.