Evidence map›Paper›PMID 19682934›Full record

ArticleMolecular cell2009

Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell-cycle regulation of H3K79 dimethylation.

Julia M Schulze, Jessica Jackson, Shima Nakanishi, Jennifer M Gardner, Thomas Hentrich, Jeff Haug, Mark Johnston, Sue L Jaspersen, Michael S Kobor, Ali Shilatifard

Abstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. A novel role of DOT1L in kidney diseases.Molecular biology reports · 2023
    Review
  13. Article
  14. Article
  15. Review
  16. Histone sumoylation and chromatin dynamics.Nucleic acids research · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. Article

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Julia M SchulzeCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, BC, Canada.
Jessica Jackson
Shima Nakanishi
Jennifer M Gardner
Thomas Hentrich
Jeff Haug
Mark Johnston
Sue L Jaspersen
Michael S Kobor
Ali Shilatifard

Funding

Chromatin Modifications by Histone Ubiquitination and MethylationsR01GM069905 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI SHILATIFARD, ALI · 2004 to 2015
$4.7M
NIGMS NIH HHS GM069905NIGMS NIH HHS R01 GM069905
6 · The paper itself

Abstract

To identify regulators involved in determining the differential pattern of H3K79 methylation by Dot1, we screened the entire yeast gene deletion collection by GPS for genes required for normal levels of H3K79 di- but not trimethylation. We identified the cell cycle-regulated SBF protein complex required for H3K79 dimethylation. We also found that H3K79 di- and trimethylation are mutually exclusive, with M/G1 cell cycle-regulated genes significantly enriched for H3K79 dimethylation. Since H3K79 trimethylation requires prior monoubiquitination of H2B, we performed genome-wide profiling of H2BK123 monoubiquitination and showed that H2BK123 monoubiquitination is not detected on cell cycle-regulated genes and sites containing H3K79me2, but is found on H3K79me3-containing regions. A screen for genes responsible for the establishment/removal of H3K79 dimethylation resulted in identification of NRM1 and WHI3, both of which impact the transcription by the SBF and MBF protein complexes, further linking the regulation of methylation status of H3K79 to the cell cycle.

Indexed as

Cell CycleProtein Processing, Post-TranslationalDNA-Binding ProteinsDNA, IntergenicGene Expression ProfilingGene Expression Regulation, FungalHistone-Lysine N-MethyltransferaseHistonesLysineMethylationNuclear ProteinsOligonucleotide Array Sequence AnalysisOpen Reading FramesPromoter Regions, GeneticRepressor ProteinsRNA-Binding ProteinsBre1 protein, S cerevisiaeDNA-Binding ProteinsDNA, IntergenicDot1 protein, S cerevisiaeHistone-Lysine N-MethyltransferaseHistonesLysineNrm1 protein, S cerevisiaeNuclear ProteinsRAD6 protein, S cerevisiaeRepressor ProteinsRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSBF protein, S cerevisiaeSWI4 protein, S cerevisiaeSWI6 protein, S cerevisiaeTranscription FactorsUbiquitin-Conjugating EnzymesWhi3 protein, S cerevisiae

Identifiers

PMID19682934
PMCPMC3222332

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.