Evidence map›Paper›PMID 19682380›Full record

ArticleGenome biology2009

MouseCyc: a curated biochemical pathways database for the laboratory mouse.

Alexei V Evsikov, Mary E Dolan, Michael P Genrich, Emily Patek, Carol J Bult

Abstract readComparative Study
In one paragraph

Article in Genome biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. Review
  3. Metabolomic and transcriptional profiling reveals bioenergetic stress and activation of cell death and inflammatory pathwaysJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Frontiers in microbiology · 2017
    Article
  14. Mouse genome database 2016.Nucleic acids research · 2016
    Article
  15. Modeling biochemical pathways in the gene ontology.Database : the journal of biological databases and curation · 2016
    Article
  16. Visual annotation display (VLAD): a tool for finding functional themes in lists of genes.Mammalian genome : official journal of the International Mammalian Genome Society · 2015
    Article
  17. Mouse Genome Informatics (MGI): reflecting on 25 years.Mammalian genome : official journal of the International Mammalian Genome Society · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexei V EvsikovThe Jackson Laboratory, Bar Harbor, ME 04609, USA. Alexei.Evsikov@jax.org
Mary E Dolan
Michael P Genrich
Emily Patek
Carol J Bult

Funding

MouseCyc: A Biochemical Pathway Database for the MouseR01HG003622 · NHGRI · JACKSON LABORATORY · PI BULT, CAROL J · 2006 to 2008
$737k
NHGRI NIH HHS HG003622NHGRI NIH HHS R01 HG003622
6 · The paper itself

Abstract

Linking biochemical genetic data to the reference genome for the laboratory mouse is important for comparative physiology and for developing mouse models of human biology and disease. We describe here a new database of curated metabolic pathways for the laboratory mouse called MouseCyc http://mousecyc.jax.org. MouseCyc has been integrated with genetic and genomic data for the laboratory mouse available from the Mouse Genome Informatics database and with pathway data from other organisms, including human.

Indexed as

Biosynthetic PathwaysDatabases, GeneticAnimalsDisease Models, AnimalHumansMice

Identifiers

PMID19682380
PMCPMC2745765

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.