Evidence map›Paper›PMID 19680239›Full record

ArticleNature2009

Structures of the tRNA export factor in the nuclear and cytosolic states.

Atlanta G Cook, Noemi Fukuhara, Martin Jinek, Elena Conti

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
  2. Article
  3. Assembly mechanism of the snRNA nuclear export complex.Nature structural & molecular biology · 2025
    Article
  4. Article
  5. RNA (New York, N.Y.) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Structural basis of MALAT1 RNA maturation and mascRNA biogenesis.Nature structural & molecular biology · 2024
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Gle1 is required for tRNA to stimulate Dbp5 ATPase activitybioRxiv : the preprint server for biology · 2023
    Article
  17. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  18. Article
  19. Article
  20. Review

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Atlanta G CookStructural Cell Biology, MPI for Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany.
Noemi Fukuhara
Martin Jinek
Elena Conti
European Molecular Biology Organization · DEMax Planck Society · DEUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transfer RNAs are among the most ubiquitous molecules in cells, central to decoding information from messenger RNAs on translating ribosomes. In eukaryotic cells, tRNAs are actively transported from their site of synthesis in the nucleus to their site of function in the cytosol. This is mediated by a dedicated nucleo-cytoplasmic transport factor of the karyopherin-beta family (Xpot, also known as Los1 in Saccharomyces cerevisiae). Here we report the 3.2 A resolution structure of Schizosaccharomyces pombe Xpot in complex with tRNA and RanGTP, and the 3.1 A structure of unbound Xpot, revealing both nuclear and cytosolic snapshots of this transport factor. Xpot undergoes a large conformational change on binding cargo, wrapping around the tRNA and, in particular, binding to the tRNA 5' and 3' ends. The binding mode explains how Xpot can recognize all mature tRNAs in the cell and yet distinguish them from those that have not been properly processed, thus coupling tRNA export to quality control.

Indexed as

RNA TransportBinding SitesCell NucleusCrystallography, X-RayCytosolGTPase-Activating ProteinsModels, MolecularNuclear Pore Complex ProteinsProtein BindingProtein Conformationran GTP-Binding ProteinRNA, FungalRNA, TransferRNA, Transfer, PheSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsGTPase-Activating ProteinsNuclear Pore Complex Proteinsran GTP-Binding ProteinRNA, FungalRNA, TransferRNA, Transfer, PheSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsXpot protein, S pombe

Identifiers

PMID19680239
OpenAlexW2119909859

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.