Evidence map›Paper›PMID 19679631›Full record

ArticleClinical chemistry2009

Interactive modeling for ongoing utility of pharmacogenetic diagnostic testing: application for warfarin therapy.

Mark W Linder, Marjorie Bon Homme, Kristen K Reynolds, Brian F Gage, Charles Eby, Natalia Silvestrov, Roland Valdes

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Clinical chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
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  6. Ethnic Diversity and Warfarin Pharmacogenomics.Frontiers in pharmacology · 2022
    Review
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  8. Effects of CYP2C9 and VKORC1 polymorphisms on warfarin sensitivity and responsiveness during the stabilization phase of therapy.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2019
    Article
  9. Impact ofGenes · 2018
    Article
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Mark W LinderDepartment of Pathology and Laboratory Medicine, University of Louisville School of Medicine, Louisville, KY, USA.
Marjorie Bon Homme
Kristen K Reynolds
Brian F Gage
Charles Eby
Natalia Silvestrov
Roland Valdes
University of Louisville · USMorehouse College · USUniversity of California, Los Angeles · USWashington University in St. Louis · US

Funding

Personalized medicine informatics for anticoagulation therapyR44HL090055 · NHLBI · PHARMACOGENETICS DIAGNOSTIC LABORATORIES · PI LINDER, MARK W, REYNOLDS, KRISTEN KEELING · 2008 to 2012
$4.5M
Thinrs ParticipantsR01HL074724 · NHLBI · WASHINGTON UNIVERSITY · PI GAGE, BRIAN F · 2003 to 2006
$2.7M
NHLBI NIH HHS R01 HL074724NHLBI NIH HHS R44 HL090055NIAAA NIH HHS K23 AA014232
6 · The paper itself

Abstract

backgroundThe application of pharmacogenetic results requires demonstrable correlations between a test result and an indicated specific course of action. We developed a computational decision-support tool that combines patient-specific genotype and phenotype information to provide strategic dosage guidance. This tool, through estimating quantitative and temporal parameters associated with the metabolism- and concentration-dependent response to warfarin, provides the necessary patient-specific context for interpreting international normalized ratio (INR) measurements.

methodsWe analyzed clinical information, plasma S-warfarin concentration, and CYP2C9 (cytochrome P450, family 2, subfamily C, polypeptide 9) and VKORC1 (vitamin K epoxide reductase complex, subunit 1) genotypes for 137 patients with stable INRs. Plasma S-warfarin concentrations were evaluated by VKORC1 genotype (-1639G>A). The steady-state plasma S-warfarin concentration was calculated with CYP2C9 genotype-based clearance rates and compared with actual measurements.

resultsThe plasma S-warfarin concentration required to yield the target INR response is significantly (P < 0.05) associated with VKORC1 -1639G>A genotype (GG, 0.68 mg/L; AG, 0.48 mg/L; AA, 0.27 mg/L). Modeling of the plasma S-warfarin concentration according to CYP2C9 genotype predicted 58% of the variation in measured S-warfarin concentration: Measured [S-warfarin] = 0.67(Estimated [S-warfarin]) + 0.16 mg/L.

conclusionsThe target interval of plasma S-warfarin concentration required to yield a therapeutic INR can be predicted from the VKORC1 genotype (pharmacodynamics), and the progressive changes in S-warfarin concentration after repeated daily dosing can be predicted from the CYP2C9 genotype (pharmacokinetics). Combining the application of multivariate equations for estimating the maintenance dose with genotype-guided pharmacokinetics/pharmacodynamics modeling provides a powerful tool for maximizing the value of CYP2C9 and VKORC1 test results for ongoing application to patient care.

Indexed as

Decision Support TechniquesAdultAgedAged, 80 and overAnticoagulantsAryl Hydrocarbon HydroxylasesCytochrome P-450 CYP2C9FemaleGenotypeHumansInternational Normalized RatioMaleMiddle AgedMixed Function OxygenasesPharmacogeneticsPhenotypeAnticoagulantsAryl Hydrocarbon HydroxylasesCYP2C9 protein, humanCytochrome P-450 CYP2C9Mixed Function OxygenasesVitamin K Epoxide ReductasesVKORC1 protein, humanWarfarin

Identifiers

PMID19679631
PMCPMC3131846
OpenAlexW2080240084

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.