Evidence map›Paper›PMID 19678941›Full record

ArticleJournal of negative results in biomedicine2009

Refractoriness of hepatitis C virus internal ribosome entry site to processing by Dicer in vivo.

Dominique L Ouellet, Isabelle Plante, Vincent Boissonneault, Cherifa Ayari, Patrick Provost

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Journal of negative results in biomedicine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Dominique L OuelletCentre de Recherche en Rhumatologie et Immunologie, CHUL Research Center/CHUQ, 2705 Blvd Laurier, Quebec, QC, G1V 4G2, Canada. dominique.ouellet@crchul.ulaval.ca
Isabelle Plante
Vincent Boissonneault
Cherifa Ayari
Patrick Provost
Université Laval · CAEndocrinology Research Center · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHepatitis C virus (HCV) is a positive-strand RNA virus harboring a highly structured internal ribosome entry site (IRES) in the 5' nontranslated region of its genome. Important for initiating translation of viral RNAs into proteins, the HCV IRES is composed of RNA structures reminiscent of microRNA precursors that may be targeted by the host RNA silencing machinery.

resultsWe report that HCV IRES can be recognized and processed into small RNAs by the human ribonuclease Dicer in vitro. Furthermore, we identify domains II, III and VI of HCV IRES as potential substrates for Dicer in vitro. However, maintenance of the functional integrity of the HCV IRES in response to Dicer overexpression suggests that the structure of the HCV IRES abrogates its processing by Dicer in vivo.

conclusionOur results suggest that the HCV IRES may have evolved to adopt a structure or a cellular context that is refractory to Dicer processing, which may contribute to viral escape of the host RNA silencing machinery.

Indexed as

Virus InternalizationBase SequenceCell LineHepacivirusHumansMolecular Sequence DataProtein BindingProtein Structure, TertiaryRibonuclease IIIRibosomesRNA InterferenceRNA Processing, Post-TranscriptionalRNA, RibosomalRNA, ViralSubstrate SpecificityRibonuclease IIIRNA, RibosomalRNA, Viral

Identifiers

PMID19678941
PMCPMC2746800
OpenAlexW2146079676

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.