Evidence map›Paper›PMID 19673650›Full record

ArticleThe Journal of infectious diseases2009

Pegylated interferon and ribavirin promote early evolution of nonstructural 5A protein in individuals with hepatitis C who demonstrate a response to treatment.

Mamta K Jain, He-Jun Yuan, Beverley Adams-Huet, Amanda Reeck, Janel Shelton, Nahid Attar, Song Zhang, Avidan U Neumann, David S Carney, Michael Gale and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Mamta K JainDepartment of Internal Medicine, University of Texas Southwestern Medical Center, 4323 Harry Hines Boulevard, Dallas, TX 75390, USA. mamta.jain@utsouthwestern.edu
He-Jun Yuan
Beverley Adams-Huet
Amanda Reeck
Janel Shelton
Nahid Attar
Song Zhang
Avidan U Neumann
David S Carney
Michael Gale
William M Lee
The University of Texas at Austin · USBar-Ilan University · ILThe University of Texas Southwestern Medical Center · USUniversity of Washington · US

Funding

NORTH AND CENTRAL TEXAS CTSA FOR PEDIATRIC RESEARCHUL1RR024982 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI TOTO, ROBERT DANIEL · 2007 to 2011
$27.9M
XU 40468 IN HYPERCHOLESTEROLEMIAM01RR000633 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI SAKHAEE, KHASHAYAR · 1985 to 2007
$21.0M
The Host Response to Hepatitis C VirusR01AI060389 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI GALE, MICHAEL · 2003 to 2012
$3.4M
Molecular Basis of Interferon Response in HCVK23AI065630 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI JAIN, MAMTA K · 2005 to 2009
$621k
NCRR NIH HHS M01 RR000633NCRR NIH HHS UL1 RR024982NIAID NIH HHS K23 AI065630NIAID NIH HHS R01 AI060389
6 · The paper itself

Abstract

backgroundHepatitis C virus (HCV) quasispecies diversity is more likely to affect early viral decline during treatment of hepatitis C than is having human immunodeficiency virus (HIV) infection. We evaluated the influence of HCV therapy on changes in the nonstructural 5A (NS5A) protein.

methodsFifteen patients with HCV genotype 1 infection with or without HIV infection were recruited for the present study, and the decrease in the HCV RNA level was measured at early time points. The evolution of HCV NS5A quasispecies within the first week was analyzed by comparing the clones observed at later times in the study with the baseline consensus sequence of individual patients. The response to therapy was defined as an early response (ER; ie, an HCV RNA level <615 IU/mL at week 4) or a slow response (SR; ie, a detectable HCV RNA level at week 4).

resultsHIV infection did not affect early viral kinetics. At baseline, lower diversity was seen in NS5A and in the amino and carboxyl termini of patients with an ER, compared with those with an SR. Rapid evolution of the NS5A genetic region occurred in patients with an ER (P = .01) but not in those with an SR (P = .73). The evolution was the result of an increase in the number of amino acid substitutions in the carboxyl region (P = .02) in patients with an ER.

conclusionsSelective pressure appears to result in more-marked changes in individuals with an ER than in those with an SR. The carboxyl terminus was subject to the most change and may be an important determinant of phenotypic resistance to interferon-based therapy.

Indexed as

AdolescentAdultAgedAntiviral AgentsDrug Therapy, CombinationEvolution, MolecularHepatitis CHIV InfectionsHumansInterferon-alphaInterferon alpha-2Middle AgedMolecular Sequence DataPhylogenyPolyethylene GlycolsRecombinant ProteinsAntiviral AgentsInterferon-alphaInterferon alpha-2NS-5 protein, hepatitis C viruspeginterferon alfa-2aPolyethylene GlycolsRecombinant ProteinsRibavirinRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural Proteins

Identifiers

PMID19673650
PMCPMC2951387
OpenAlexW2105721917

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.