Evidence map›Paper›PMID 19672692›Full record

ArticleMolecular biology reports2010

Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae.

Yu Luo, Guang-Lei Lv, Wen-Ting Wu, Shan-Na Chen, Zai-Quan Cheng

Abstract read
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In one paragraph

Article in Molecular biology reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yu LuoCollege of Life Science, Yunnan University, 650091, Kunming, China. yuluokm@yahoo.com.cn
Guang-Lei Lv
Wen-Ting Wu
Shan-Na Chen
Zai-Quan Cheng

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to understand the mechanism of the strong resistance of Oryza granulata to Xanthomonas oryzae pv oryzae (Xoo), cDNA microarrays containing 2,436 cDNA clones of Oryza granulata derived from Suppression subtractive library and cDNA library were constructed and genome expression patterns after inoculating Xoo were investigated. Three hundred and 83 clones were up-regulated, 836 clones were down-regulated after pathogen infection. Approximately 800 clones were sequenced and BLAST search were carried out. There are no homologous sequences for 35 clones of them. The functions of the homologous sequences for most clones are unknown. The known functions of the homologous sequences involved in photosynthesis, respiration, material transport, signal transduction, pathogenesis-related proteins, transcription factors, the active oxygen scavenging system and so on. The putative functions of them in responding to Xoo were discussed.

Indexed as

Gene Expression Regulation, PlantGenome, PlantAmino Acid SequenceGene Expression ProfilingGenomic LibraryHost-Pathogen InteractionsMolecular Sequence DataOligonucleotide Array Sequence AnalysisOryzaPhylogenyPlant DiseasesPlant ProteinsSequence Homology, Amino AcidXanthomonasPlant Proteins

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.