Evidence map›Paper›PMID 19668866›Full record

ArticleMolecular bioSystems2009

Computational model and microfluidic platform for the investigation of paracrine and autocrine signaling in mouse embryonic stem cells.

David Ellison, Alex Munden, Andre Levchenko

Open access · greenAbstract read
In one paragraph

Article in Molecular bioSystems, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
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  8. Article
  9. Article
  10. Review
  11. Stem cells in microfluidics.Biomicrofluidics · 2011
    Article
  12. Article
  13. Microfluidics-integrated time-lapse imaging for analysis of cellular dynamics.Integrative biology : quantitative biosciences from nano to macro · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

David EllisonDepartment of Biomedical Engineering, Johns Hopkins University School of Engineering, Clark Hall 208C, 3400 North Charles Street, Baltimore, MD 21218, USA.
Alex Munden
Andre Levchenko
Johns Hopkins University · US

Funding

Information tranfer in NF-kappaB and MAPK pathwaysR01GM072024 · NIGMS · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2004 to 2019
$3.9M
NIGMS NIH HHS R01 GM072024
6 · The paper itself

Abstract

Autocrine and paracrine signaling mechanisms are traditionally difficult to study due to the recursive nature of the process and the sub-micromolar concentrations involved. This has proven to be especially limiting in the study of embryonic stem cells that might rely on such signaling for viability, self-renewal, and proliferation. To better characterize possible effects of autocrine and paracrine signaling in the setting of expanding stem cells, we developed a computational model assuming a critical need for cell-secreted survival factors. This model suggested that the precise way in which the removal of putative survival factors could affect stem cell survival in culture. We experimentally tested the predictions in mouse embryonic stem cells by taking advantage of a novel microfluidic device allowing removal of the cell-conditioned medium at defined time intervals. Experimental results in both serum-containing and defined N2B27 media confirmed computational model predictions, suggested existence of unknown survival factors with distinct rates of diffusion, and revealed an adaptive/selective phase in mouse embryonic stem cell response to a lack of paracrine signaling. We suggest that the described computational/experimental platform can be used to identify and study specific factors and pathways involved in a wide variety of paracrine signaling systems.

Indexed as

AnimalsAutocrine CommunicationCell Culture TechniquesCells, CulturedComputational BiologyCulture Media, ConditionedData Interpretation, StatisticalEmbryonic Stem CellsEquipment DesignMiceMicrofluidic Analytical TechniquesModels, BiologicalParacrine CommunicationSignal TransductionCulture Media, Conditioned

Identifiers

PMID19668866
PMCPMC5561740
OpenAlexW2091727603

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.