Evidence map›Paper›PMID 19668195›Full record

ArticleNature chemical biology2009

Synthetic partial agonists reveal key steps in IP3 receptor activation.

Ana M Rossi, Andrew M Riley, Stephen C Tovey, Taufiq Rahman, Olivier Dellis, Emily J A Taylor, Valery G Veresov, Barry V L Potter, Colin W Taylor

Abstract read
In one paragraph

Article in Nature chemical biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. From IP3RPEP6 Inhibition of IPCellular and molecular life sciences : CMLS · 2025
    Review
  3. Quantal CaCell reports · 2021
    Article
  4. Review
  5. IP3R Channels in Male Reproduction.International journal of molecular sciences · 2020
    Review
  6. Article
  7. Both d- and l-Glucose Polyphosphates Mimic d-Journal of medicinal chemistry · 2020
    Article
  8. Article
  9. d-Journal of medicinal chemistry · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Prostaglandin EMolecular pharmacology · 2017
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Aberrant calcium signaling by transglutaminase-mediated posttranslational modification of inositol 1,4,5-trisphosphate receptors.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ana M RossiDepartment of Pharmacology, University of Cambridge, Cambridge, UK.
Andrew M Riley
Stephen C Tovey
Taufiq Rahman
Olivier Dellis
Emily J A Taylor
Valery G Veresov
Barry V L Potter
Colin W Taylor

Funding

Biotechnology and Biological Sciences Research Council BB/E004660/1Wellcome Trust 082837Wellcome Trust 085295
6 · The paper itself

Abstract

Inositol 1,4,5-trisphosphate receptors (IP(3)Rs) are ubiquitous intracellular Ca2+ channels. IP(3) binding to the IP(3)-binding core (IBC) near the N terminus initiates conformational changes that lead to opening of a pore. The mechanisms underlying this process are unresolved. We synthesized 2-O-modified IP(3) analogs that are partial agonists of IP(3)R. These are similar to IP(3) in their interactions with the IBC, but they are less effective than IP(3) in rearranging the relationship between the IBC and the N-terminal suppressor domain (SD), and they open the channel at slower rates. IP(3)R with a mutation in the SD occupying a position similar to the 2-O substituent of the partial agonists has a reduced open probability that is similar for full and partial agonists. Bulky or charged substituents from either the ligand or the SD therefore block obligatory coupling of the IBC and the SD. Analysis of DeltaG for ligand binding shows that IP(3) is recognized by the IBC and conformational changes then propagate entirely via the SD to the pore.

Indexed as

AnimalsBinding SitesInositol 1,4,5-Trisphosphate ReceptorsIon Channel GatingLigandsModels, MolecularMolecular Sequence DataPoint MutationProtein BindingProtein ConformationInositol 1,4,5-Trisphosphate ReceptorsLigands

Identifiers

PMID19668195
PMCPMC2869033

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.