Evidence map›Paper›PMID 19667193›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Ultraslow oligomerization equilibria of p53 and its implications.

Eviatar Natan, Daniel Hirschberg, Nina Morgner, Carol V Robinson, Alan R Fersht

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. TP53: the unluckiest of genes?Cell death and differentiation · 2025
    Review
  4. Article
  5. A molecular mechanism for the "digital" response of p53 to stress.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Cancers · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. NF-κB Rel subunit exchange on a physiological timescale.Protein science : a publication of the Protein Society · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. TP53: an oncogene in disguise.Cell death and differentiation · 2015
    Review
  16. Propagation of aggregated p53: Cross-reaction and coaggregation vs. seeding.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Article
  19. Domain-domain interactions in full-length p53 and a specific DNA complex probed by methyl NMR spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Eviatar NatanMedical Research Council Centre for Protein Engineering, Cambridge CB2 0QH, United Kingdom.
Daniel Hirschberg
Nina Morgner
Carol V Robinson
Alan R Fersht
University of Cambridge · GBMedical Research Council · GB

Funding

Medical Research Council MC_U105474168
6 · The paper itself

Abstract

The tumor suppressor p53 is in equilibrium at cellular concentrations between dimers and tetramers. Oncogenic mutant p53 (mut) exerts a dominant-negative effect on co-expression of p53 wild-type (wt) and mut alleles in cancer cells. It is believed that wt and mut form hetero-tetramers of attenuated activity, via their tetramerization domains. Using electrospray mass spectrometry on isotopically labeled samples, we measured directly the composition and rates of formation of p53 complexes in the presence and absence of response element DNA. The dissociation of tetramers was unexpectedly very slow (t(1/2) = 40 min) at 37 degrees C, matched by slow association of dimers, which is approximately four times longer than the half-life of spontaneous denaturation of wt p53. On mixing wt tetramers with the oncogenic contact mutant R273H of low DNA affinity, we observed the same slow formation of only wt(4), wt(2)mut(2), and mut(4), in the ratio 1:2:1, on a cellular time scale. On mixing wt and mut with response element DNAs P21 and BAX, we observed only the complexes wt(4)xDNA, wt(2)mut(2)xDNA, and mut(4)xDNA, with relative dissociation constants 1:4:71 and 1:13:85, respectively, accounting for the dominant-negative effect by weakened affinity. p53 dimers assemble rapidly to tetramers on binding to response element DNA, initiated by the p53 DNA binding domains. The slow oligomerization of free p53, competing with spontaneous denaturation, has implications for the possible regulation of p53 by binding proteins and DNA that affect tetramerization kinetics as well as equilibria.

Indexed as

Amino Acid Substitutionbcl-2-Associated X ProteinBinding, CompetitiveCyclin-Dependent Kinase Inhibitor p21DNAHumansKineticsMutant ProteinsProtein BindingProtein MultimerizationProto-Oncogene Proteins c-bcl-2Spectrometry, Mass, Electrospray IonizationThermodynamicsTime FactorsTumor Suppressor Protein p53BAX protein, humanbcl-2-Associated X ProteinCyclin-Dependent Kinase Inhibitor p21DNAMutant ProteinsProto-Oncogene Proteins c-bcl-2Tumor Suppressor Protein p53

Identifiers

PMID19667193
PMCPMC2731847
OpenAlexW2064802374

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.