Evidence map›Paper›PMID 19666576›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Epigenetic changes during disease progression in a murine model of human chronic lymphocytic leukemia.

Shih-Shih Chen, Aparna Raval, Amy J Johnson, Erin Hertlein, Te-Hui Liu, Victor X Jin, Mara H Sherman, Shu-Jun Liu, David W Dawson, Katie E Williams and 11 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 85 citations in OpenAlex.

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  12. NF-κB p50 (Blood · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 3 countries.

Shih-Shih ChenDepartment of Molecular Virology, Immunology, and Medical Genetics, Human Cancer Genetics Program, Comprehensive Cancer Center, Ohio State University, Columbus, OH 43210, USA.
Aparna Raval
Amy J Johnson
Erin Hertlein
Te-Hui Liu
Victor X Jin
Mara H Sherman
Shu-Jun Liu
David W Dawson
Katie E Williams
Mark Lanasa
Sandya Liyanarachchi
Thomas S Lin
Guido Marcucci
Yuri Pekarsky
Ramana Davuluri
Carlo M Croce
Denis C Guttridge
Michael A Teitell
John C Byrd
Christoph Plass
The Ohio State University · USCancer Genetics (United States) · USLaboratory of Molecular Genetics · PLBroad Center · USChildren's Hospital of Philadelphia · USDuke Medical Center · USStanford University · USUniversity of California, Los Angeles · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Tissue CoreP01CA081534 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KIPPS, THOMAS J · 2000 to 2016
$59.5M
Postdoctoral Training in Cancer GeneticsT32CA106196 · NCI · OHIO STATE UNIVERSITY · PI DE LA CHAPELLE, ALBERT · 2004 to 2013
$3.6M
Epigenetic Targeted Therapy for Chronic Lymphocytic Leu*R21CA110496 · NCI · OHIO STATE UNIVERSITY · PI BYRD, JOHN C · 2004 to 2005
$613k
Novel pharmacologic agents in CLLP20CA081534 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KIPPS, THOMAS J. · 1999 to 1999
–
NCI NIH HHS CA110496NCI NIH HHS CA81534NCI NIH HHS P01 CA081534NCI NIH HHS P30 CA016058NCI NIH HHS P30 CA16058NCI NIH HHS R21 CA110496NCI NIH HHS T32 CA106196PHS HHS A101956
6 · The paper itself

Abstract

Epigenetic alterations, including gain or loss of DNA methylation, are a hallmark of nearly every malignancy. Changes in DNA methylation can impact expression of cancer-related genes including apoptosis regulators and tumor suppressors. Because such epigenetic changes are reversible, they are being aggressively investigated as potential therapeutic targets. Here we use the Emu-TCL1 transgenic mouse model of chronic lymphocytic leukemia (CLL) to determine the timing and patterns of aberrant DNA methylation, and to investigate the mechanisms that lead to aberrant DNA methylation. We show that CLL cells from Emu-TCL1 mice at various stages recapitulate epigenetic alterations seen in human CLL. Aberrant methylation of promoter sequences is observed as early as 3 months of age in these animals, well before disease onset. Abnormally methylated promoter regions include binding sites for the transcription factor FOXD3. We show that loss of Foxd3 expression due to an NF-kappaB p50/p50:HDAC1 repressor complex occurs in TCL1-positive B cells before methylation. Therefore, specific transcriptional repression is an early event leading to epigenetic silencing of target genes in murine and human CLL. These results provide strong rationale for the development of strategies to target NF-kappaB components in CLL and potentially other B-cell malignancies.

Indexed as

Epigenesis, GeneticAnimalsDisease Models, AnimalDisease ProgressionDNA MethylationForkhead Transcription FactorsGene Expression Regulation, LeukemicGene SilencingHistone Deacetylase 1Histone DeacetylasesHumansLeukemia, Lymphocytic, Chronic, B-CellMiceNF-kappa B p50 SubunitProto-Oncogene ProteinsRepressor ProteinsForkhead Transcription FactorsFoxd3 protein, mouseHdac1 protein, mouseHistone Deacetylase 1Histone DeacetylasesNF-kappa B p50 SubunitProto-Oncogene ProteinsRepressor ProteinsTcl1 protein, mouseTrans-Activators

Identifiers

PMID19666576
PMCPMC2726368
OpenAlexW2076895489

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.