Evidence map›Paper›PMID 19666497›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome.

Sun Woo Hong, Seong Min Hong, Jae Wook Yoo, Young Chul Lee, Soyoun Kim, John T Lis, Dong-Ki Lee

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

  1. iScience · 2025
    Article
  2. Article
  3. Review
  4. The essential and multifunctional TFIIH complex.Protein science : a publication of the Protein Society · 2018
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Emerging Views on the CTD Code.Genetics research international · 2012
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Sun Woo HongDepartment of Chemistry, Global Research Laboratory for RNAi Medicine, BK21 School of Chemical Materials Science, Sungkyunkwan University, Suwon 440-746, Korea.
Seong Min Hong
Jae Wook Yoo
Young Chul Lee
Soyoun Kim
John T Lis
Dong-Ki Lee
Sungkyunkwan University · KRChonnam National University · KRCornell University · USDongguk University · KR

Funding

COORDINATE GENE REGULATION IN ANIMAL CELLSR01GM025232 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIS, JOHN T · 1985 to 2020
$8.4M
COORDINATE GENE REGULATION IN ANIMAL CELLSR37GM025232 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIS, JOHN THOMAS · 1995 to 2004
$2.5M
NIGMS NIH HHS GM25232NIGMS NIH HHS R01 GM025232NIGMS NIH HHS R37 GM025232
6 · The paper itself

Abstract

Ser-5 phosphorylation of the RNA polymerase II (Pol II) C-terminal domain by TFIIH kinase has been implicated in critical steps in mRNA synthesis, such as Pol II promoter escape and mRNA 5'-capping. However, the general requirement and precise role of TFIIH kinase in Pol II transcription still remain elusive. Here we use a chemical genetics approach to show that, for a majority of budding-yeast genes, specific inhibition of the yeast TFIIH kinase results in a dramatic reduction in both mRNA level and Ser-5 C-terminal domain phosphorylation. Surprisingly, inhibition of TFIIH kinase activity only partially affected both Pol II density and Ser-2 phosphorylation level. The discrepancy between mRNA level and Pol II density is attributed to the defective 5'-capping, which results in the destabilization of mRNAs. Therefore, contrary to the current belief, our study points strongly toward a minor role of TFIIH kinase in Pol II transcription, and a more significant role in mRNA capping in budding yeast.

Indexed as

Genome, FungalTranscription, GeneticActinsBinding SitesChromatin ImmunoprecipitationCyclin-Dependent KinasesEnzyme InhibitorsExoribonucleasesGene Expression ProfilingGene Expression Regulation, FungalGlucose Transport Proteins, FacilitativemRNA GuanylyltransferasesMutationNucleotidyltransferasesOligonucleotide Array Sequence AnalysisPhosphorylationAct1 protein, S cerevisiaeActinsCyclin-Dependent KinasesEnzyme InhibitorsExoribonucleasesGlucose Transport Proteins, FacilitativeHXT1 protein, S cerevisiaeKin28 protein kinase, S cerevisiaemRNA GuanylyltransferasesNucleotidyltransferasesRNA, MessengerRNA Polymerase IISaccharomyces cerevisiae ProteinsXRN1 protein, S cerevisiae

Identifiers

PMID19666497
PMCPMC2732804
OpenAlexW2058122977

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.