Evidence map›Paper›PMID 19666489›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

On the remarkable mechanostability of scaffoldins and the mechanical clamp motif.

Alejandro Valbuena, Javier Oroz, Rubén Hervás, Andrés Manuel Vera, David Rodríguez, Margarita Menéndez, Joanna I Sulkowska, Marek Cieplak, Mariano Carrión-Vázquez

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
  2. Review
  3. MechanoProDB: a web-based database for exploring the mechanical properties of proteins.Database : the journal of biological databases and curation · 2024
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  10. Pseudo-Improper-Dihedral Model for Intrinsically Disordered Proteins.Journal of chemical theory and computation · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Alejandro ValbuenaInstituto Cajal, Consejo Superior de Investigaciones Científicas and Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas, Avenida Doctor Arce 37, E-28002 Madrid, Spain.
Javier Oroz
Rubén Hervás
Andrés Manuel Vera
David Rodríguez
Margarita Menéndez
Joanna I Sulkowska
Marek Cieplak
Mariano Carrión-Vázquez
Instituto Cajal · ESConsejo Superior de Investigaciones Científicas · ESPolish Academy of Sciences · PLCentro de Investigación Biomédica en Red · ESCentro de Investigación Biomédica en Red de Enfermedades Respiratorias · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein mechanostability is a fundamental biological property that can only be measured by single-molecule manipulation techniques. Such studies have unveiled a variety of highly mechanostable modules (mainly of the Ig-like, beta-sandwich type) in modular proteins subjected to mechanical stress from the cytoskeleton and the metazoan cell-cell interface. Their mechanostability is often attributed to a "mechanical clamp" of secondary structure (a patch of backbone hydrogen bonds) fastening their ends. Here we investigate the nanomechanics of scaffoldins, an important family of scaffolding proteins that assembles a variety of cellulases into the so-called cellulosome, a microbial extracellular nanomachine for cellulose adhesion and degradation. These proteins anchor the microbial cell to cellulose substrates, which makes their connecting region likely to be subjected to mechanical stress. By using single-molecule force spectroscopy based on atomic force microscopy, polyprotein engineering, and computer simulations, here we show that the cohesin I modules from the connecting region of cellulosome scaffoldins are the most robust mechanical proteins studied experimentally or predicted from the entire Protein Data Bank. The mechanostability of the cohesin modules studied correlates well with their mechanical kinetic stability but not with their thermal stability, and it is well predicted by computer simulations, even coarse-grained. This extraordinary mechanical stability is attributed to 2 mechanical clamps in tandem. Our findings provide the current upper limit of protein mechanostability and establish shear mechanical clamps as a general structural/functional motif widespread in proteins putatively subjected to mechanical stress. These data have important implications for the scaffoldin physiology and for protein design in biotechnology and nanotechnology.

Indexed as

Amino Acid MotifsAcetivibrio thermocellusBiotechnologyCelluloseComputer SimulationDatabases, ProteinKineticsMicroscopy, Atomic ForceNanotechnologyProtein ConformationProtein EngineeringProtein FoldingProteinsProtein Structure, SecondaryStress, MechanicalCelluloseProteins

Identifiers

PMID19666489
PMCPMC2719556
OpenAlexW2037805485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.