ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.).
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.
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Who cites it
40 citing papers in PubMed, 139 citations in OpenAlex.
- Development of Genomic SSR Markers to Reveal the Genetic Diversity in Trichosanthes kirilowii from Korea.Molecular biotechnology · 2026Article
- Deciphering morpho-physiochemical diversity, mineral profiling, and population structure in brinjal (3 Biotech · 2025Article
- Fine mapping and candidate gene analysis of qFL-A12-5: a fiber length-related QTL introgressed from Gossypium barbadense into Gossypium hirsutum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- A Compendium for Novel Marker-Based Breeding Strategies in Eggplant.Plants (Basel, Switzerland) · 2023Review
- Optimizing hybrid vigor: a comprehensive analysis of genetic distance and heterosis in eggplant landraces.Frontiers in plant science · 2023Article
- Genetic mapping of simply inherited categorical traits, including anthocyanin accumulation profiles and fruit appearance, in eggplant (Solanum melongena).Molecular biology reports · 2022Article
- Construction of a High-Density Recombination Bin-Based Genetic Map Facilitates High-Resolution Mapping of a Major QTL Underlying Anthocyanin Pigmentation in Eggplant.International journal of molecular sciences · 2022Article
- Exploring the genetic diversity and population structure of scarlet eggplant germplasm from Rwanda through iPBS-retrotransposon markers.Molecular biology reports · 2021Article
- Improved genome assembly and pan-genome provide key insights into eggplant domestication and breeding.The Plant journal : for cell and molecular biology · 2021Article
- Combining genome composition and differential gene expression analyses reveals that SmPGH1 contributes to bacterial wilt resistance in somatic hybrids.Plant cell reports · 2020Article
- Fine mapping of a major locus representing the lack of prickles in eggplant revealed the availability of a 0.5-kb insertion/deletion for marker-assisted selection.Breeding science · 2020Article
- Genetic diversity and fingerprinting of 33 standard flue-cured tobacco varieties for use in distinctness, uniformity, and stability testing.BMC plant biology · 2020Article
- Article
- Construction of a SNP-Based Genetic Map Using SLAF-Seq and QTL Analysis of Morphological Traits in Eggplant.Frontiers in genetics · 2020Article
- Construction of a core collection of eggplant (Breeding science · 2019Article
- Molecular Characterization of 170 New gDNA-SSR Markers for Genetic Diversity in Button Mushroom (Mycobiology · 2019Article
- Comprehensive Characterization of Simple Sequence Repeats in Eggplant (Frontiers in plant science · 2018Article
- Development and Genetic Characterization of Advanced Backcross Materials and An Introgression Line Population ofFrontiers in plant science · 2017Article
- Large-scale development of SSR markers in tobacco and construction of a linkage map in flue-cured tobacco.Breeding science · 2016Article
- Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Eggplant (Solanum melongena L.), also known as aubergine or brinjal, is an important vegetable in many countries. Few useful molecular markers have been reported for eggplant. We constructed simple sequence repeat (SSR)-enriched genomic libraries in order to develop SSR markers, and sequenced more than 14,000 clones. From these sequences, we designed 2,265 primer pairs to flank SSR motifs. We identified 1,054 SSR markers from amplification of 1,399 randomly selected primer pairs. The markers have an average polymorphic information content of 0.27 among eight lines of S. melongena. Of the 1,054 SSR markers, 214 segregated in an intraspecific mapping population. We constructed cDNA libraries from several eggplant tissues and obtained 6,144 expressed sequence tag (EST) sequences. From these sequences, we designed 209 primer pairs, 7 of which segregated in the mapping population. On the basis of the segregation data, we constructed a linkage map, and mapped the 236 segregating markers to 14 linkage groups. The linkage map spans a total length of 959.1 cM, with an average marker distance of 4.3 cM. The markers should be a useful resource for qualitative and quantitative trait mapping and for marker-assisted selection in eggplant breeding.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.