Evidence map›Paper›PMID 19661062›Full record

ArticleThe Journal of biological chemistry2009

The signature 3-O-sulfo group of the anticoagulant heparin sequence is critical for heparin binding to antithrombin but is not required for allosteric activation.

Benjamin Richard, Richard Swanson, Steven T Olson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Recombinant Heparin-New Opportunities.Frontiers in medicine · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Heparan sulfate 3-O-sulfation: a rare modification in search of a function.Matrix biology : journal of the International Society for Matrix Biology · 2014
    Review
  18. Demystifying heparan sulfate-protein interactions.Annual review of biochemistry · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Benjamin RichardCenter for Molecular Biology of Oral Diseases, University of Illinois at Chicago, Chicago, Illinois 60612, USA.
Richard Swanson
Steven T Olson
University of Illinois Chicago · US

Funding

Molecular Basis of Blood Coagulation RegulationR37HL039888 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI OLSON, STEVEN T. · 2010 to 2019
$3.9M
MOLECULAR BASIS OF BLOOD COAGULATION REGULATIONR01HL039888 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI OLSON, STEVEN T. · 1993 to 2009
$3.8M
MOLECULAR BASIS OF BLOOD COAGULATION REGULATIONR29HL039888 · NHLBI · HENRY FORD HOSPITAL · PI OLSON, STEVEN T. · 1988 to 1992
–
NHLBI NIH HHS HL-39888NHLBI NIH HHS R01 HL039888NHLBI NIH HHS R37 HL039888
6 · The paper itself

Abstract

Heparin and heparan sulfate glycosaminoglycans allosterically activate the serpin, antithrombin, by binding through a specific pentasaccharide sequence containing a critical 3-O-sulfo group. To elucidate the role of the 3-O-sulfo group in the activation mechanism, we compared the effects of deleting the 3-O-sulfo group or mutating the Lys(114) binding partner of this group on antithrombin-pentasaccharide interactions by equilibrium binding and rapid kinetic analyses. Binding studies over a wide range of ionic strength and pH showed that loss of the 3-O-sulfo group caused a massive approximately 60% loss in binding energy for the antithrombin-pentasaccharide interaction due to the disruption of a cooperative network of ionic and nonionic interactions. Despite this affinity loss, the 3-O-desulfonated pentasaccharide retained the ability to induce tryptophan fluorescence changes and to enhance factor Xa reactivity in antithrombin, indicative of normal conformational activation. Rapid kinetic studies showed that loss of the 3-O-sulfo group affected both the ability of the pentasaccharide to recognize native antithrombin and its ability to preferentially bind and stabilize activated antithrombin. By contrast, mutation of Lys(114) solely affected the preferential interaction of the pentasaccharide with activated antithrombin. These findings demonstrate that the 3-O-sulfo group functions as a key determinant of heparin pentasaccharide activation of antithrombin both by contributing to the Lys(114)-independent recognition of native antithrombin and by triggering a Lys(114)-dependent induced fit interaction with activated antithrombin that locks the serpin in the activated state.

Indexed as

Allosteric RegulationAnticoagulantsAntithrombinsBiocatalysisCarbohydrate SequenceCell LineHeparinHumansHydrogen-Ion ConcentrationKineticsLysineMutationOligosaccharidesPeptide HydrolasesSulfonic AcidsTemperatureAnticoagulantsAntithrombinsHeparinLysineOligosaccharidesPeptide HydrolasesSulfonic Acids

Identifiers

PMID19661062
PMCPMC2785635
OpenAlexW2066808385

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.