Evidence map›Paper›PMID 19656953›Full record

ArticleNucleic acids research2009

Human telomeres that contain (CTAGGG)n repeats show replication dependent instability in somatic cells and the male germline.

Aaron Mendez-Bermudez, Mark Hills, Hilda A Pickett, Anh Tuân Phan, Jean-Louis Mergny, Jean-François Riou, Nicola J Royle

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 47 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. The absence of (TCAGGG)Scientific reports · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Telomere content measurement in human hematopoietic cells: Comparative analysis of qPCR and Flow-FISH techniques.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Aaron Mendez-BermudezDepartment of Genetics, University of Leicester, Leicester LE1 7RH, UK.
Mark Hills
Hilda A Pickett
Anh Tuân Phan
Jean-Louis Mergny
Jean-François Riou
Nicola J Royle
Nanyang Technological University · SGUniversity of Leicester · GB

Funding

Cancer Research UK C17992/A8641Medical Research Council G0500336
6 · The paper itself

Abstract

A number of different processes that impact on telomere length dynamics have been identified but factors that affect the turnover of repeats located proximally within the telomeric DNA are poorly defined. We have identified a particular repeat type (CTAGGG) that is associated with an extraordinarily high mutation rate (20% per gamete) in the male germline. The mutation rate is affected by the length and sequence homogeneity of the (CTAGGG)n array. This level of instability was not seen with other sequence-variant repeats, including the TCAGGG repeat type that has the same composition. Telomeres carrying a (CTAGGG)n array are also highly unstable in somatic cells with the mutation process resulting in small gains or losses of repeats that also occasionally result in the deletion of the whole (CTAGGG)n array. These sequences are prone to quadruplex formation in vitro but adopt a different topology from (TTAGGG)n (see accompanying article). Interestingly, short (CTAGGG)2 oligonucleotides induce a DNA damage response (gammaH2AX foci) as efficiently as (TTAGGG)2 oligos in normal fibroblast cells, suggesting they recruit POT1 from the telomere. Moreover, in vitro assays show that (CTAGGG)n repeats bind POT1 more efficiently than (TTAGGG)n or (TCAGGG)n. We estimate that 7% of human telomeres contain (CTAGGG)n repeats and when present, they create additional problems that probably arise during telomere replication.

Indexed as

Germ-Line MutationRepetitive Sequences, Nucleic AcidAllelesDNA DamageDNA ReplicationG-QuadruplexesHumansMaleMutationOligonucleotidesTelomereTelomere-Binding ProteinsTelomeric Repeat Binding Protein 2OligonucleotidesTelomere-Binding ProteinsTelomeric Repeat Binding Protein 2

Identifiers

PMID19656953
PMCPMC2764434
OpenAlexW2096294584

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.