Evidence map›Paper›PMID 19656948›Full record

ArticleThe Journal of biological chemistry2009

Loop 2 structure in glycine and GABA(A) receptors plays a key role in determining ethanol sensitivity.

Daya I Perkins, James R Trudell, Daniel K Crawford, Liana Asatryan, Ronald L Alkana, Daryl L Davies

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 35 citations in OpenAlex.

  1. A newly developed anesthetic based on a unique chemical core.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  2. Review
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  6. Subunit stoichiometry and arrangement in a heteromeric glutamate-gated chloride channel.Proceedings of the National Academy of Sciences of the United States of America · 2016
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  7. Review
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  13. Altered sedative effects of ethanol in mice with α1 glycine receptor subunits that are insensitive to Gβγ modulation.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2014
    Article
  14. Article
  15. Review
  16. Review
  17. Zinc-dependent modulation of α2- and α3-glycine receptor subunits by ethanol.Alcoholism, clinical and experimental research · 2013
    Article
  18. Article
  19. Intermediate closed state for glycine receptor function revealed by cysteine cross-linking.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Daya I PerkinsDepartment of Pharmacology and Pharmaceutical Sciences, School of Pharmacy, University of Southern California, Los Angeles, California 90089, USA.
James R Trudell
Daniel K Crawford
Liana Asatryan
Ronald L Alkana
Daryl L Davies
University of Southern California · US

Funding

LOW LEVEL HYPERBARIC ETHANOL ANTAGONISMR01AA003972 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ALKANA, RONALD L · 1985 to 2009
$2.7M
Properties of Specific Alcohol Binding SitesR01AA013378 · NIAAA · STANFORD UNIVERSITY · PI TRUDELL, JAMES ROBERT · 2002 to 2009
$1.9M
Sites /Mechanisms of Ethanol Action in P2X receptorsR01AA013922 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DAVIES, DARYL L · 2004 to 2009
$1.7M
Pressure-Based Pharmacological Alcoholism TreatmentsR21AA013890 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DAVIES, DARYL L · 2003 to 2005
$488k
Pressure-Based Pharmacological Alcoholism TreatmentsF31AA017569 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PERKINS, DAYA · 2008 to 2010
$96k
NIAAA NIH HHS AA013378NIAAA NIH HHS AA013890NIAAA NIH HHS AA013922NIAAA NIH HHS AA017293NIAAA NIH HHS AA017569NIAAA NIH HHS AA03972NIAAA NIH HHS F31 AA017569NIAAA NIH HHS R01 AA003972NIAAA NIH HHS R01 AA013378NIAAA NIH HHS R01 AA013922NIAAA NIH HHS R21 AA013890PHS HHS G64371
6 · The paper itself

Abstract

The present study tests the hypothesis that the structure of extracellular domain Loop 2 can markedly affect ethanol sensitivity in glycine receptors (GlyRs) and gamma-aminobutyric acid type A receptors (GABA(A)Rs). To test this, we mutated Loop 2 in the alpha1 subunit of GlyRs and in the gamma subunit of alpha1beta2gamma2GABA(A)Rs and measured the sensitivity of wild type and mutant receptors expressed in Xenopus oocytes to agonist, ethanol, and other agents using two-electrode voltage clamp. Replacing Loop 2 of alpha1GlyR subunits with Loop 2 from the deltaGABA(A)R (deltaL2), but not the gammaGABA(A)R subunit, reduced ethanol threshold and increased the degree of ethanol potentiation without altering general receptor function. Similarly, replacing Loop 2 of the gamma subunit of GABA(A)Rs with deltaL2 shifted the ethanol threshold from 50 mm in WT to 1 mm in the GABA(A) gamma-deltaL2 mutant. These findings indicate that the structure of Loop 2 can profoundly affect ethanol sensitivity in GlyRs and GABA(A)Rs. The deltaL2 mutations did not affect GlyR or GABA(A)R sensitivity, respectively, to Zn(2+) or diazepam, which suggests that these deltaL2-induced changes in ethanol sensitivity do not extend to all allosteric modulators and may be specific for ethanol or ethanol-like agents. To explore molecular mechanisms underlying these results, we threaded the WT and deltaL2 GlyR sequences onto the x-ray structure of the bacterial Gloeobacter violaceus pentameric ligand-gated ion channel homologue (GLIC). In addition to being the first GlyR model threaded on GLIC, the juxtaposition of the two structures led to a possible mechanistic explanation for the effects of ethanol on GlyR-based on changes in Loop 2 structure.

Indexed as

AnimalsCyanobacteriaDose-Response Relationship, DrugEthanolFemaleGABA-A Receptor AntagonistsGABA ModulatorsHumansIon ChannelsModels, MolecularMutationProtein MultimerizationProtein Structure, QuaternaryProtein SubunitsReceptors, GABA-AReceptors, GlycineEthanolGABA-A Receptor AntagonistsGABA ModulatorsIon ChannelsProtein SubunitsReceptors, GABA-AReceptors, Glycine

Identifiers

PMID19656948
PMCPMC2785658
OpenAlexW1971857963

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.