Evidence map›Paper›PMID 19656905›Full record

ArticlePlant physiology2009

Modulation of the poly(ADP-ribosyl)ation reaction via the Arabidopsis ADP-ribose/NADH pyrophosphohydrolase, AtNUDX7, is involved in the response to oxidative stress.

Kazuya Ishikawa, Takahisa Ogawa, Eisuke Hirosue, Yasumune Nakayama, Kazuo Harada, Eiichiro Fukusaki, Kazuya Yoshimura, Shigeru Shigeoka

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Article
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  4. Frontiers in plant science · 2022
    Article
  5. Frontiers in plant science · 2021
    Article
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  7. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Kazuya IshikawaDepartment of Advanced Bioscience, Faculty of Agriculture, Kinki University, Nara 631-8505, Japan.
Takahisa Ogawa
Eisuke Hirosue
Yasumune Nakayama
Kazuo Harada
Eiichiro Fukusaki
Kazuya Yoshimura
Shigeru Shigeoka
Chubu University · JPOsaka University · JPKindai University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here, we assessed modulation of the poly(ADP-ribosyl)ation (PAR) reaction by an Arabidopsis (Arabidopsis thaliana) ADP-ribose (Rib)/NADH pyrophosphohydrolase, AtNUDX7 (for Arabidopsis Nudix hydrolase 7), in AtNUDX7-overexpressed (Pro(35S):AtNUDX7) or AtNUDX7-disrupted (KO-nudx7) plants under normal conditions and oxidative stress caused by paraquat treatment. Levels of NADH and ADP-Rib were decreased in the Pro(35S):AtNUDX7 plants but increased in the KO-nudx7 plants under normal conditions and oxidative stress compared with the control plants, indicating that AtNUDX7 hydrolyzes both ADP-Rib and NADH as physiological substrates. The Pro(35S):AtNUDX7 and KO-nudx7 plants showed increased and decreased tolerance, respectively, to oxidative stress compared with the control plants. Levels of poly(ADP-Rib) in the Pro(35S):AtNUDX7 and KO-nudx7 plants were markedly higher and lower, respectively, than those in the control plants. Depletion of NAD(+) and ATP resulting from the activation of the PAR reaction under oxidative stress was completely suppressed in the Pro(35S):AtNUDX7 plants. Accumulation of NAD(+) and ATP was observed in the KO-nudx7- and 3-aminobenzamide-treated plants, in which the PAR reaction was suppressed. The expression levels of DNA repair factors, AtXRCC1 and AtXRCC2 (for x-ray repair cross-complementing factors 1 and 2), paralleled that of AtNUDX7 under both normal conditions and oxidative stress, although an inverse correlation was observed between the levels of AtXRCC3, AtRAD51 (for Escherichia coli RecA homolog), AtDMC1 (for disrupted meiotic cDNA), and AtMND1 (for meiotic nuclear divisions) and AtNUDX7. These findings suggest that AtNUDX7 controls the balance between NADH and NAD(+) by NADH turnover under normal conditions. Under oxidative stress, AtNUDX7 serves to maintain NAD(+) levels by supplying ATP via nucleotide recycling from free ADP-Rib molecules and thus regulates the defense mechanisms against oxidative DNA damage via modulation of the PAR reaction.

Indexed as

Oxidative StressAdaptation, PhysiologicalAdenosine TriphosphateAntioxidantsArabidopsisArabidopsis ProteinsDNA RepairGene Expression Regulation, PlantGene Knockout TechniquesIntracellular SpaceNADNudix HydrolasesPoly Adenosine Diphosphate RibosePoly(ADP-ribose) Polymerase InhibitorsPyrophosphatasesStress, PhysiologicalAdenosine TriphosphateAntioxidantsArabidopsis ProteinsNADNudix HydrolasesNUDX7 protein, ArabidopsisPoly Adenosine Diphosphate RibosePoly(ADP-ribose) Polymerase InhibitorsPyrophosphatases

Identifiers

PMID19656905
PMCPMC2754630
OpenAlexW1983503751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.