Evidence map›Paper›PMID 19656770›Full record

ArticleMolecular & cellular proteomics : MCP2009

The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.

Rebekah L Gundry, Kimberly Raginski, Yelena Tarasova, Irina Tchernyshyov, Damaris Bausch-Fluck, Steven T Elliott, Kenneth R Boheler, Jennifer E Van Eyk, Bernd Wollscheid

Abstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Article
  2. Article
  3. Impaired myoblast differentiation and muscle IGF-1 receptor signaling pathway activation after N-glycosylation inhibition.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Cytosolic N-GlcNAc proteins are formed by the action of endo-β-N-acetylglucosaminidase.Biochemical and biophysical research communications · 2020
    Article
  10. Article
  11. The in silico human surfaceome.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Chemical Glycoproteomics.Chemical reviews · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rebekah L GundryDepartment of Medicine, The Johns Hopkins University School of Medicine, Baltimore, Maryland 21224, USA.
Kimberly Raginski
Yelena Tarasova
Irina Tchernyshyov
Damaris Bausch-Fluck
Steven T Elliott
Kenneth R Boheler
Jennifer E Van Eyk
Bernd Wollscheid

Funding

SCLERODERMA-ASSOCIATED PAHP50HL084946 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI VAN EYK, JENNIFER E · 2007 to 2011
$20.6M
Embryonic Stem Cell Derived Cardiac MyocytesZIAAG000849 · NIA · NATIONAL INSTITUTE ON AGING · PI BOHELER, KENNETH · 2009 to 2012
$2.3M
Post-translational regulation of embryonic stem cells: a proteomic study.R01HL085434 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI VAN EYK, JENNIFER E · 2009 to 2010
$810k
Surface Proteins in the Differentiation of Stem Cells to CardiomyocytesR00HL094708 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI GUNDRY, REBEKAH L. · 2011 to 2013
$702k
Surface Proteins in the Differentiation of Stem Cells to CardiomyocytesK99HL094708 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI GUNDRY, REBEKAH L. · 2009 to 2010
$195k
NHLBI PROTEOMICS INITIATIVE-N01HV28180-268028180-268028180N01HV028180 · HV · JOHNS HOPKINS UNIVERSITY · PI VAN EYK, JENNIFER E · 2002 to 2006
–
NHLBI NIH HHS K99 HL094708NHLBI NIH HHS N01 HV028180NHLBI NIH HHS N01-HV-28180NHLBI NIH HHS P50 HL084946NHLBI NIH HHS P50-HL-084946-01NHLBI NIH HHS R00 HL094708NHLBI NIH HHS R01 HL085434PHS HHS K99-L094708-01
6 · The paper itself

Abstract

Endogenous regeneration and repair mechanisms are responsible for replacing dead and damaged cells to maintain or enhance tissue and organ function, and one of the best examples of endogenous repair mechanisms involves skeletal muscle. Although the molecular mechanisms that regulate the differentiation of satellite cells and myoblasts toward myofibers are not fully understood, cell surface proteins that sense and respond to their environment play an important role. The cell surface capturing technology was used here to uncover the cell surface N-linked glycoprotein subproteome of myoblasts and to identify potential markers of myoblast differentiation. 128 bona fide cell surface-exposed N-linked glycoproteins, including 117 transmembrane, four glycosylphosphatidylinositol-anchored, five extracellular matrix, and two membrane-associated proteins were identified from mouse C2C12 myoblasts. The data set revealed 36 cluster of differentiation-annotated proteins and confirmed the occupancy for 235 N-linked glycosylation sites. The identification of the N-glycosylation sites on the extracellular domain of the proteins allowed for the determination of the orientation of the identified proteins within the plasma membrane. One glycoprotein transmembrane orientation was found to be inconsistent with Swiss-Prot annotations, whereas ambiguous annotations for 14 other proteins were resolved. Several of the identified N-linked glycoproteins, including aquaporin-1 and beta-sarcoglycan, were found in validation experiments to change in overall abundance as the myoblasts differentiate toward myotubes. Therefore, the strategy and data presented shed new light on the complexity of the myoblast cell surface subproteome and reveal new targets for the clinically important characterization of cell intermediates during myoblast differentiation into myotubes.

Indexed as

AnimalsAquaporin 1Binding SitesCell DifferentiationCell MembraneGlycoproteinsGlycosylationMembrane ProteinsMiceModels, BiologicalMyoblastsProteomeProteomicsSarcoglycansAquaporin 1GlycoproteinsMembrane ProteinsProteomeSarcoglycans

Identifiers

PMID19656770
PMCPMC2773721

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.