Evidence map›Paper›PMID 19654423›Full record

ArticleJournal of lipid research2010

Use of high performance liquid chromatography-electrospray ionization-tandem mass spectrometry for the analysis of ceramide-1-phosphate levels.

Dayanjan S Wijesinghe, Jeremy C Allegood, Luciana B Gentile, Todd E Fox, Mark Kester, Charles E Chalfant

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 97 citations in OpenAlex.

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  13. SMPDL3b modulates radiation-induced DNA damage response in renal podocytes.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Dayanjan S WijesingheDepartment of Biochemistry and Molecular Biology, Virginia Commonwealth University School of Medicine, Richmond, VA 23298, USA.
Jeremy C Allegood
Luciana B Gentile
Todd E Fox
Mark Kester
Charles E Chalfant
Virginia Commonwealth University · USPenn State Milton S. Hershey Medical Center · USHunter Holmes McGuire VA Medical Center · US

Funding

The Role of Ceramide Kinase in Eicosanoid SynthesisR01HL072925 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHALFANT, CHARLES E. · 2004 to 2012
$3.1M
CONSTRUCTION OF SIGNALLING FACILITYC06RR017393 · NCRR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MACRINA, FRANCIS L · 2002 to 2002
$2.0M
Sphingolipid Regulation of Caspase 9 Alternative SplicingR01CA117950 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI CHALFANT, CHARLES E. · 2006 to 2009
$919k
NCI NIH HHS CA117950NCI NIH HHS R01 CA117950NCRR NIH HHS 1C06-RR17393NCRR NIH HHS C06 RR017393NHLBI NIH HHS HL072925NHLBI NIH HHS R01 HL072925
6 · The paper itself

Abstract

Ceramide-1-phosphate (C1P) is a bioactive sphingolipid with roles in several biological processes. Currently, high performance liquid chromatography-electrospray ionization-tandem mass spectrometry (HPLC ESI-MS/MS) offers the most efficient method of quantifying C1P. However, the published protocols have several drawbacks causing overestimations and carryovers. Here, the reported overestimation of C1P was shown to be due to incomplete neutralization of base hydrolyzed lipid extracts leading to the hydrolysis of SM to C1P. Actual quantity of C1P in cells (6 pmols/10(6) cells) was much lower than previously reported. Also, the major species of C1P produced by ceramide kinase (CERK) was found to be d(18:1/16:0) with a minority of d(18:1/24:1) and d(18:1/24:0). The artifactual production of C1P from SM was used for generating C1Ps as retention time markers. Elimination of carryovers between samples and a 2-fold enhancement in the signal strength was achieved by heating the chromatographic column to 60 (degrees) C. The role of ceramide transport protein (CERT) in supplying substrate to CERK was also revalidated using this new assay. Finally, our results demonstrate the presence of additional pathway(s) for generation of the C1P subspecies, d(18:1/18:0) C1P, as well as a significant portion of d(18:1/16:0), d(18:1/24:1), and d(18:1/24:0). In conclusion, this study introduces a much improved and validated method for detection of C1P by mass spectrometry and demonstrates specific changes in the C1P subspecies profiles upon downregulation of CERK and CERT.

Indexed as

AmidesArtifactsBase SequenceCell Line, TumorCeramidesChromatography, High Pressure LiquidChromatography, Reverse-PhaseHumansHydrolysisPhosphotransferases (Alcohol Group Acceptor)Protein Serine-Threonine KinasesReproducibility of ResultsRNA, Small InterferingSpectrometry, Mass, Electrospray IonizationSphingomyelinsTandem Mass SpectrometryAmidesceramide 1-phosphateceramide kinaseCeramidesCERT1 protein, humanN-(3-hydroxy-1-hydroxymethyl-3-phenylpropyl)dodecanamidePhosphotransferases (Alcohol Group Acceptor)Protein Serine-Threonine KinasesRNA, Small InterferingSphingomyelins

Identifiers

PMID19654423
PMCPMC2817594
OpenAlexW2087258337

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.