Evidence map›Paper›PMID 19654317›Full record

ArticleThe Journal of biological chemistry2009

An asymmetric model for Na+-translocating glutaconyl-CoA decarboxylases.

Daniel Kress, Daniela Brügel, Iris Schall, Dietmar Linder, Wolfgang Buckel, Lars-Oliver Essen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Discovery and implementation of a novel pathway forBiotechnology for biofuels · 2019
    Article
  4. Article
  5. Structure and function of biotin-dependent carboxylases.Cellular and molecular life sciences : CMLS · 2013
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daniel KressBiochemie, Fachbereich Chemie, Philipps-Universität Marburg, D-35032 Marburg, Germany.
Daniela BrügelMikrobiologie, Fachbereich Biologie, Philipps-Universität Marburg, D-35032 Marburg, Germany.
Iris SchallMikrobiologie, Fachbereich Biologie, Philipps-Universität Marburg, D-35032 Marburg, Germany.
Dietmar LinderBiochemie, Fachbereich Medizin, Justus von Liebig-Universität, D-35392 Gieβen, Germany.
Wolfgang BuckelMikrobiologie, Fachbereich Biologie, Philipps-Universität Marburg, D-35032 Marburg, Germany; Max-Plank-Institut für Terrestrische Mikrobiologie, D-35043 Marburg, Germany. Electronic address: buckel@staff.uni-marburg.de.
Lars-Oliver EssenBiochemie, Fachbereich Chemie, Philipps-Universität Marburg, D-35032 Marburg, Germany. Electronic address: essen@chemie.uni-marburg.de.
Philipps University of Marburg · DEUniversity of Giessen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glutaconyl-CoA decarboxylase (Gcd) couples the biotin-dependent decarboxylation of glutaconyl-CoA with the generation of an electrochemical Na(+) gradient. Sequencing of the genes encoding all subunits of the Clostridium symbiosum decarboxylase membrane complex revealed that it comprises two distinct biotin carrier subunits, GcdC(1) and GcdC(2), which differ in the length of a central alanine- and proline-rich linker domain. Co-crystallization of the decarboxylase subunit GcdA with the substrate glutaconyl-CoA, the product crotonyl-CoA, and the substrate analogue glutaryl-CoA, respectively, resulted in a high resolution model for substrate binding and catalysis revealing remarkable structural changes upon substrate binding. Unlike the GcdA structure from Acidaminococcus fermentans, these data suggest that in intact Gcd complexes, GcdA is associated as a tetramer crisscrossed by a network of solvent-filled tunnels.

Indexed as

Protein Structure, QuaternaryProtein Structure, TertiaryAcidaminococcusAcyl Coenzyme AAmino Acid SequenceBacterial ProteinsBinding SitesCarboxy-LyasesClostridium symbiosumCrystallography, X-RayGlutamic AcidModels, MolecularMolecular Sequence DataMolecular StructureMultigene FamilyProtein SubunitsAcyl Coenzyme ABacterial ProteinsCarboxy-Lyasescrotonyl-coenzyme Aglutaconyl CoA decarboxylaseGlutamic AcidProtein SubunitsSodium

Identifiers

PMID19654317
PMCPMC2788889
OpenAlexW2005153824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.