Evidence map›Paper›PMID 19653890›Full record

ArticleBMC genomics2009

Brucella microti: the genome sequence of an emerging pathogen.

Stéphane Audic, Magali Lescot, Jean-Michel Claverie, Holger C Scholz

Abstract read
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Two novel real-time PCR assays forMicrobiology spectrum · 2026
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  3. Review
  4. First isolation and identification ofFrontiers in microbiology · 2025
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  8. The Retrospective on AtypicalMicroorganisms · 2022
    Review
  9. Article
  10. Comparative Genome-Wide Transcriptome Analysis ofFrontiers in microbiology · 2021
    Article
  11. Article
  12. Laboratory Diagnosis of Human Brucellosis.Clinical microbiology reviews · 2019
    Review
  13. Brucellosis: Evolution and expected comeback.International journal of veterinary science and medicine · 2018
    Review
  14. Phenotypic and Molecular Characterization ofFrontiers in veterinary science · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Identification ofFrontiers in microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stéphane AudicLaboratoire Information Génomique et Structurale, CNRS - UPR2589, Aix-Marseille University, Institut de Microbiologie de la Méditerranée (IM2, IFR-88), Parc Scientifique de Luminy, FR- 13288, Marseille cedex 09, France. stephane.audic@igs.cnrs-mrs.fr
Magali Lescot
Jean-Michel Claverie
Holger C Scholz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundUsing a combination of pyrosequencing and conventional Sanger sequencing, the complete genome sequence of the recently described novel Brucella species, Brucella microti, was determined. B. microti is a member of the genus Brucella within the Alphaproteobacteria, which consists of medically important highly pathogenic facultative intracellular bacteria. In contrast to all other Brucella species, B. microti is a fast growing and biochemically very active microorganism with a phenotype more similar to that of Ochrobactrum, a facultative human pathogen. The atypical phenotype of B. microti prompted us to look for genomic differences compared to other Brucella species and to look for similarities with Ochrobactrum.

resultsThe genome is composed of two circular chromosomes of 2,117,050 and 1,220,319 base pairs. Unexpectedly, we found that the genome sequence of B. microti is almost identical to that of Brucella suis 1330 with an overall sequence identity of 99.84% in aligned regions. The most significant structural difference between the two genomes is a bacteriophage-related 11,742 base pairs insert only present in B. microti. However, this insert is unlikely to have any phenotypical consequence. Only four protein coding genes are shared between B. microti and Ochrobactrum anthropi but impaired in other sequenced Brucella. The most noticeable difference between B. microti and other Brucella species was found in the sequence of the 23S ribosomal RNA gene. This unusual variation could have pleiotropic effects and explain the fast growth of B. microti.

conclusionContrary to expectations from the phenotypic analysis, the genome sequence of B. microti is highly similar to that of known Brucella species, and is remotely related to the one of O. anthropi. How the few differences in gene content between B. microti and B. suis 1330 could result in vastly different phenotypes remains to be elucidated. This unexpected finding will complicate the task of identifying virulence determinants in the Brucella genus. The genome sequence of B. microti will serve as a model for differential expression analysis and complementation studies. Our results also raise some concerns about the importance given to phenotypical traits in the definition of bacterial species.

Indexed as

Genome, BacterialBase SequenceBrucellaComparative Genomic HybridizationDNA, BacterialGenes, BacterialMolecular Sequence DataOchrobactrum anthropiPhenotypePhylogenyPseudogenesRNA, Ribosomal, 23SSequence AlignmentSequence Analysis, DNADNA, BacterialRNA, Ribosomal, 23S

Identifiers

PMID19653890
PMCPMC2743711

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.