Evidence map›Paper›PMID 19651989›Full record

ArticleGenes & development2009

A regulator from Chlamydia trachomatis modulates the activity of RNA polymerase through direct interaction with the beta subunit and the primary sigma subunit.

Xiancai Rao, Padraig Deighan, Ziyu Hua, Xiaomei Hu, Jin Wang, Miao Luo, Jie Wang, Yanmei Liang, Guangming Zhong, Ann Hochschild and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Coordinated topoisomerase function shapes the fluoroquinolone response ofbioRxiv : the preprint server for biology · 2026
    Article
  3. Review
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  5. Type III Secretion inMicrobiology and molecular biology reviews : MMBR · 2023
    Review
  6. Diversity of σJournal of bacteriology · 2023
    Article
  7. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Purification of Tag-FreeBiochemistry · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Xiancai RaoDepartment of Microbiology, Immunology, and Parasitology, Louisiana State University Health Sciences Center, New Orleans, Louisiana 70112, USA.
Padraig Deighan
Ziyu Hua
Xiaomei Hu
Jin Wang
Miao Luo
Jie Wang
Yanmei Liang
Guangming Zhong
Ann Hochschild
Li Shen
Louisiana State University Health Sciences Center New Orleans · USHarvard University · USThe University of Texas Health Science Center at San Antonio · USBipar · FRBoston University · USChongqing Medical University · CN

Funding

PROTEIN/PROTEIN INTERACTIONS IN PROKARYOTIC GENE CONTROLR01GM044025 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HOCHSCHILD, ANN · 1990 to 2015
$8.1M
Analyses of sigma factor 28 of C. trachomatisR01AI055869 · NIAID · LSU HEALTH SCIENCES CENTER · PI SHEN, LI · 2005 to 2010
$1.6M
NIAID NIH HHS AI055869NIAID NIH HHS R01 AI055869NIGMS NIH HHS GM44025NIGMS NIH HHS R01 GM044025
6 · The paper itself

Abstract

The obligate intracellular human pathogen Chlamydia trachomatis undergoes a complex developmental program involving transition between two forms: the infectious elementary body (EB), and the rapidly dividing reticulate body (RB). However, the regulators controlling this development have not been identified. To uncover potential regulators of transcription in C. trachomatis, we screened a C. trachomatis genomic library for sequences encoding proteins that interact with RNA polymerase (RNAP). We report the identification of one such protein, CT663, which interacts with the beta and sigma subunits of RNAP. Specifically, we show that CT663 interacts with the flap domain of the beta subunit (beta-flap) and conserved region 4 of the primary sigma subunit (sigma(66) in C. trachomatis). We find that CT663 inhibits sigma(66)-dependent (but not sigma(28)-dependent) transcription in vitro, and we present evidence that CT663 exerts this effect as a component of the RNAP holoenzyme. The analysis of C. trachomatis-infected cells reveals that CT663 begins to accumulate at the commencement of the RB-to-EB transition. Our findings suggest that CT663 functions as a negative regulator of sigma(66)-dependent transcription, facilitating a global change in gene expression. The strategy used here is generally applicable in cases where genetic tools are unavailable.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsChlamydia trachomatisDNA-Directed RNA PolymerasesEscherichia coliSigma FactorBacterial ProteinsDNA-Directed RNA PolymerasesRNA polymerase beta subunitSigma Factor

Identifiers

PMID19651989
PMCPMC2720258
OpenAlexW2108845389

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.