Evidence map›Paper›PMID 19651599›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Structural basis for a human glycosylation disorder caused by mutation of the COG4 gene.

Brian C Richardson, Richard D Smith, Daniel Ungar, Ayumi Nakamura, Philip D Jeffrey, Vladimir V Lupashin, Frederick M Hughson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 64 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Golgi inCOGnito: From vesicle tethering to human disease.Biochimica et biophysica acta. General subjects · 2020
    Review
  9. Article
  10. Exposing the Elusive Exocyst Structure.Trends in biochemical sciences · 2018
    Review
  11. Article
  12. Article
  13. Conserved Oligomeric Golgi and Neuronal Vesicular Trafficking.Handbook of experimental pharmacology · 2018
    Review
  14. Article
  15. Article
  16. Molecular architecture of the complete COG tethering complex.Nature structural & molecular biology · 2016
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Brian C RichardsonDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
Richard D Smith
Daniel Ungar
Ayumi Nakamura
Philip D Jeffrey
Vladimir V Lupashin
Frederick M Hughson
Princeton University · USUniversity of Arkansas for Medical Sciences · USUniversity of California, San Francisco · USUniversity of York · GB

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structural Analysis of Membrane Tethering and Fusion ProteinsR01GM071574 · NIGMS · PRINCETON UNIVERSITY · PI HUGHSON, FREDERICK M · 2005 to 2024
$6.8M
Characterization of mammalian COG complex-interacting intra-Golgi trafficking macR01GM083144 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI VLADIMIR V LUPASHIN · 2008 to 2026
$6.5M
NIBIB NIH HHS P30 EB009998NIGMS NIH HHS GM071574NIGMS NIH HHS GM083144NIGMS NIH HHS R01 GM071574NIGMS NIH HHS R01 GM083144
6 · The paper itself

Abstract

The proper glycosylation of proteins trafficking through the Golgi apparatus depends upon the conserved oligomeric Golgi (COG) complex. Defects in COG can cause fatal congenital disorders of glycosylation (CDGs) in humans. The recent discovery of a form of CDG, caused in part by a COG4 missense mutation changing Arg 729 to Trp, prompted us to determine the 1.9 A crystal structure of a Cog4 C-terminal fragment. Arg 729 is found to occupy a key position at the center of a salt bridge network, thereby stabilizing Cog4's small C-terminal domain. Studies in HeLa cells reveal that this C-terminal domain, while not needed for the incorporation of Cog4 into COG complexes, is essential for the proper glycosylation of cell surface proteins. We also find that Cog4 bears a strong structural resemblance to exocyst and Dsl1p complex subunits. These complexes and others have been proposed to function by mediating the initial tethering between transport vesicles and their membrane targets; the emerging structural similarities provide strong evidence of a common evolutionary origin and may reflect shared mechanisms of action.

Indexed as

Crystallography, X-RayDNA Mutational AnalysisGene SilencingGlycosylationHeLa CellsHumansMembrane Transport ProteinsMutationProtein Structure, SecondaryProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStructural Homology, ProteinCOG4 protein, S cerevisiaeMembrane Transport ProteinsProtein SubunitsSaccharomyces cerevisiae Proteins

Identifiers

PMID19651599
PMCPMC2716380
OpenAlexW2133971186

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.