Evidence map›Paper›PMID 19651438›Full record

ArticleCell calcium2009

Metal-controlled interdomain cooperativity in parvalbumins.

Sergei E Permyakov, Anush G Bakunts, Maria E Permyakova, Alexander I Denesyuk, Vladimir N Uversky, Eugene A Permyakov

Abstract read
In one paragraph

Article in Cell calcium, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

  1. Calcium-binding proteins as allergens.Frontiers in allergy · 2026
    Review
  2. Comparative studies of seafood and reptile α- and β-parvalbumins.Protein science : a publication of the Protein Society · 2024
    Article
  3. What Is Parvalbumin for?Biomolecules · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Sergei E PermyakovInstitute for Biological Instrumentation of the Russian Academy of Sciences, Pushchino, Moscow, Russia. permyakov.s@gmail.com
Anush G Bakunts
Maria E Permyakova
Alexander I Denesyuk
Vladimir N Uversky
Eugene A Permyakov
Institute for Biological Instrumentation · RUIndiana University School of Medicine

Funding

Bioinformatics linkage of protein disorder and functionR01LM007688 · NLM · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DUNKER, ALAN KEITH · 2003 to 2006
$1.3M
Mining the Structural Genomics Initiative for DisorderR01GM071714 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DUNKER, ALAN KEITH · 2006 to 2009
$1.1M
Bioinformatics linkage of protein disorder and functionR56LM007688 · NLM · INDIANA UNIVERSITY INDIANAPOLIS · PI DUNKER, ALAN KEITH · 2008 to 2008
$442k
NIGMS NIH HHS GM071714-01A2NIGMS NIH HHS R01 GM071714NLM NIH HHS R01 LM007688NLM NIH HHS R01 LM007688-01A1NLM NIH HHS R56 LM007688
6 · The paper itself

Abstract

Conformational behavior of five homologous proteins, parvalbumins (PAs) from northern pike (alpha and beta isoforms), Baltic cod, and rat (alpha and beta isoforms), was studied by scanning calorimetry, circular dichroism, and bis-ANS fluorescence. The mechanism of the temperature-induced denaturation of these proteins depends dramatically on both the peculiarities of their amino acid sequences and on their interaction with metal ions. For example, the pike alpha-PA melting can be described by two successive two-state transitions with mid-temperatures of 90 and 120 degrees C, suggesting the presence of two thermodynamic domains. The intermediate state populated at the end of the first transition was shown to bind Ca(2+) ions, and was characterized by the largely preserved secondary structure and increased solvent exposure of hydrophobic groups. Mg(2+)- and Na(+)-loaded forms of pike alpha-PA demonstrated a single two-state transition. Therefore, the mechanism of the PA thermal denaturation is controlled by metal binding. It ranged from the absence of detectable first-order transition (apo-form of pike PA), to the two-state transition (e.g., Mg(2+)- and Na(+)-loaded forms of pike alpha-PA), to the more complex mechanisms (Ca(2+)-loaded PAs) involving at least one partially folded intermediate. Analysis of isolated cavities in the protein structures revealed that the interface between the CD and EF subdomains of Ca(2+)-loaded pike alpha-PA is much more loosely packed compared with PAs manifesting single heat-sorption peak. The impairment of interactions between CD and EF subdomains may cause a loss of structural cooperativity and appearance of two separate thermodynamic domains. One more peculiar feature of pike alpha-PA is that depending on its interactions with metal ions, it can be an intrinsically disordered protein (apo-form), an ordered protein of mesophilic (Na(+)-bound state), thermophilic (Mg(2+)-form), or even of the hyperthermophilic origin (Ca(2+)-form).

Indexed as

AnimalsCalciumCalorimetryCircular DichroismMetalsParvalbuminsProtein BindingProtein DenaturationProtein Structure, TertiaryRatsRecombinant ProteinsSpectrometry, FluorescenceThermodynamicsTransition TemperatureCalciumMetalsParvalbuminsRecombinant Proteins

Identifiers

PMID19651438
PMCPMC2754762
OpenAlexW2046535023

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.