Evidence map›Paper›PMID 19649706›Full record

ArticleBreast cancer research and treatment2010

The circadian gene NPAS2 is a novel prognostic biomarker for breast cancer.

Chunhui Yi, Lina Mu, Irene A Rigault de la Longrais, Olga Sochirca, Riccardo Arisio, Herbert Yu, Aaron E Hoffman, Yong Zhu, Dionyssios Katsaro

Abstract read
In one paragraph

Article in Breast cancer research and treatment, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 74 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Role of Melatonin in Cancer: Effect on Clock Genes.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Review
  11. Article
  12. Molecular Evolution of clock Genes in Vertebrates.Journal of molecular evolution · 2021
    Article
  13. Article
  14. Review
  15. Article
  16. Light Pollution and Cancer.International journal of molecular sciences · 2020
    Review
  17. Review
  18. Circadian Gene Polymorphisms Associated with Breast Cancer Susceptibility.International journal of molecular sciences · 2019
    Article
  19. Circadian (De)regulation in Head and Neck Squamous Cell Carcinoma.International journal of molecular sciences · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Chunhui YiDepartment of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT, 06520, USA.
Lina Mu
Irene A Rigault de la Longrais
Olga Sochirca
Riccardo Arisio
Herbert Yu
Aaron E Hoffman
Yong Zhu
Dionyssios Katsaro
Yale University · USUniversity of Turin · ITSt. Anna Hospital · DE

Funding

Database of Functional SNPs in Cancer-Related Environmentally Responsive GenesR01CA122676 · NCI · YALE UNIVERSITY · PI ZHU, YONG · 2007 to 2009
$848k
Circadian Genes and Breast CancerR03CA110937 · NCI · YALE UNIVERSITY · PI ZHU, YONG · 2004 to 2005
$164k
NCI NIH HHS CA110937NCI NIH HHS CA122676NCI NIH HHS R01 CA122676NCI NIH HHS R03 CA110937
6 · The paper itself

Abstract

Mounting evidence suggests that neuronal PAS domain protein 2 (NPAS2) and other circadian genes are involved in tumorigenesis and tumor growth, possibly through their control of cancer-related biologic pathways. A missense polymorphism in NPAS2 (Ala394Thr) has been shown to be associated with risk of human tumors including breast cancer. The current study further examined the prognostic significance of NPAS2 in breast cancer by genotyping the Ala394Thr polymorphism and measuring NPAS2 expression. DNA extracted from 348 breast cancer tissue samples was analyzed for NPAS2 genotype using the TaqMan allelic discrimination assay. Of these, 287 also had total RNA available for use in real-time PCR assays to determine NPAS2 expression. NPAS2 genotypes and expression levels were analyzed for associations with prognostic outcomes, as well as correlations with clinical characteristics. A high level of NPAS2 expression was strongly associated with improved disease free survival (AHR = 0.43, 95% CI: 0.21-0.86, P trend = 0.022) and overall survival (AHR = 0.42, 95% CI: 0.19-0.96, P trend = 0.036). In addition, there was a borderline, but nonsignificant association between the NPAS2 genotype corresponding to Thr394Thr and disease free survival (AHR = 1.82, 95% CI: 0.96-3.46). The Ala/Ala, Ala/Thr, and Thr/Thr genotypes were also differentially distributed by tumor severity, as measured by TNM classification (chi (2) (6df, N = 344) = 14.96, P = 0.020). These findings provide the first evidence suggesting prognostic significance of the circadian gene NPAS2 in breast cancer.

Indexed as

Genes, Tumor SuppressorAdenocarcinomaAdultAgedBasic Helix-Loop-Helix ProteinsBiomarkers, TumorBreast NeoplasmsCircadian RhythmDisease-Free SurvivalDNA, NeoplasmFemaleGene Expression Regulation, NeoplasticGenotypeHumansKaplan-Meier EstimateMiddle AgedBasic Helix-Loop-Helix ProteinsBiomarkers, TumorDNA, NeoplasmNeoplasm ProteinsNerve Tissue ProteinsNPAS2 protein, humanRNA, MessengerRNA, Neoplasm

Identifiers

PMID19649706
PMCPMC3108061
OpenAlexW1963970141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.