Evidence map›Paper›PMID 19649329›Full record

ArticlePloS one2009

Melanism in peromyscus is caused by independent mutations in agouti.

Evan P Kingsley, Marie Manceau, Christopher D Wiley, Hopi E Hoekstra

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
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  4. Loss-of-function mutations inBiology letters · 2025
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  6. Genes · 2024
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  8. The Genetic Basis of Melanism in Abert's Squirrel (Animals : an open access journal from MDPI · 2024
    Article
  9. Article
  10. Article
  11. Article
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  13. Article
  14. An enhancer ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Evan P KingsleyDepartment of Organismic and Evolutionary Biology and the Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, United States of America. ekingsley@oeb.harvard.edu
Marie Manceau
Christopher D Wiley
Hopi E Hoekstra
Harvard University · USUniversity of California, Irvine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identifying the molecular basis of phenotypes that have evolved independently can provide insight into the ways genetic and developmental constraints influence the maintenance of phenotypic diversity. Melanic (darkly pigmented) phenotypes in mammals provide a potent system in which to study the genetic basis of naturally occurring mutant phenotypes because melanism occurs in many mammals, and the mammalian pigmentation pathway is well understood. Spontaneous alleles of a few key pigmentation loci are known to cause melanism in domestic or laboratory populations of mammals, but in natural populations, mutations at one gene, the melanocortin-1 receptor (Mc1r), have been implicated in the vast majority of cases, possibly due to its minimal pleiotropic effects. To investigate whether mutations in this or other genes cause melanism in the wild, we investigated the genetic basis of melanism in the rodent genus Peromyscus, in which melanic mice have been reported in several populations. We focused on two genes known to cause melanism in other taxa, Mc1r and its antagonist, the agouti signaling protein (Agouti). While variation in the Mc1r coding region does not correlate with melanism in any population, in a New Hampshire population, we find that a 125-kb deletion, which includes the upstream regulatory region and exons 1 and 2 of Agouti, results in a loss of Agouti expression and is perfectly associated with melanic color. In a second population from Alaska, we find that a premature stop codon in exon 3 of Agouti is associated with a similar melanic phenotype. These results show that melanism has evolved independently in these populations through mutations in the same gene, and suggest that melanism produced by mutations in genes other than Mc1r may be more common than previously thought.

Indexed as

MutationAgouti Signaling ProteinAnimalsChromosomes, Artificial, BacterialGenes, RecessiveIn Situ HybridizationMelanosisPeromyscusPolymerase Chain ReactionReceptor, Melanocortin, Type 1Sequence DeletionSpecies SpecificityAgouti Signaling ProteinReceptor, Melanocortin, Type 1

Identifiers

PMID19649329
PMCPMC2713407
OpenAlexW2164893989

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.