Evidence map›Paper›PMID 19648919›Full record

ArticleNature genetics2009

A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2.

Honglin Song, Susan J Ramus, Jonathan Tyrer, Kelly L Bolton, Aleksandra Gentry-Maharaj, Eva Wozniak, Hoda Anton-Culver, Jenny Chang-Claude, Daniel W Cramer, Richard DiCioccio and 78 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 187 papers, 16 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
187citing papers in PubMed, 16 pooled it
36.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

187 citing papers in PubMed, 16 syntheses or guidelines pooled it, 309 citations in OpenAlex.

  1. Pooled it
  2. ASSOCIATION OF MTHFR A1298C POLYMORPHISM WITH BREAST CANCER AND/OR OVARIAN CANCER RISK: AN UPDATED META-ANALYSIS.African journal of traditional, complementary, and alternative medicines : AJTCAM · 2016
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  6. Network-Based Integration of GWAS and Gene Expression Identifies a HOX-Centric Network Associated with Serous Ovarian Cancer Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2015
    Pooled it
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  11. Combined and interactive effects of environmental and GWAS-identified risk factors in ovarian cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2013
    Pooled it
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  15. Guideline
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  17. Trial
  18. Article
  19. Article
  20. Review

127 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

88 authors at 20 institutions in 7 countries.

Honglin SongCancer Research UK Department of Oncology, University of Cambridge, Strangeways Research Laboratory, Cambridge, UK.
Susan J Ramus
Jonathan Tyrer
Kelly L Bolton
Aleksandra Gentry-Maharaj
Eva Wozniak
Hoda Anton-Culver
Jenny Chang-Claude
Daniel W Cramer
Richard DiCioccio
Thilo Dörk
Ellen L Goode
Marc T Goodman
Joellen M Schildkraut
Thomas Sellers
Laura Baglietto
Matthias W Beckmann
Jonathan Beesley
Jan Blaakaer
Michael E Carney
Stephen Chanock
Zhihua Chen
Julie M Cunningham
Ed Dicks
Jennifer A Doherty
Matthias Dürst
Arif B Ekici
David Fenstermacher
Brooke L Fridley
Graham Giles
Martin E Gore
Immaculata De Vivo
Peter Hillemanns
Claus Hogdall
Estrid Hogdall
Edwin S Iversen
Ian J Jacobs
Anna Jakubowska
Dong Li
Jolanta Lissowska
Jan Lubiński
Galina Lurie
Valerie McGuire
John McLaughlin
Krzysztof Medrek
Patricia G Moorman
Kirsten Moysich
Steven Narod
Catherine Phelan
Carole Pye
Harvey Risch
Ingo B Runnebaum
Gianluca Severi
Melissa Southey
Daniel O Stram
Falk C Thiel
Kathryn L Terry
Ya-Yu Tsai
Shelley S Tworoger
David J Van Den Berg
Robert A Vierkant
Shan Wang-Gohrke
Penelope M Webb
Lynne R Wilkens
Anna H Wu
Hannah Yang
Wendy Brewster
Argyrios Ziogas
Australian Cancer (Ovarian) Study
Australian Ovarian Cancer Study Group
Ovarian Cancer Association Consortium
Richard Houlston
Ian Tomlinson
Alice S Whittemore
Mary Anne Rossing
Bruce A J Ponder
Celeste Leigh Pearce
Roberta B Ness
Usha Menon
Susanne Krüger Kjaer
Jacek Gronwald
Montserrat Garcia-Closas
Peter A Fasching
Douglas F Easton
Georgia Chenevix-Trench
Andrew Berchuck
Paul D P Pharoah
Simon A Gayther
University College Hospital · GBUniversity of Cambridge · GBUniversity of Hawaiʻi at Mānoa · USMayo Clinic · USUniversity of Southern California · USBrigham and Women's Hospital · USMoffitt Cancer Center · USThe University of Melbourne · AUAarhus University Hospital · DKCancer Council Victoria · AUCentre for Human Genetics · GBDuke University · USInternational Hereditary Cancer Center · PLMedizinische Hochschule Hannover · DERoswell Park Comprehensive Cancer Center · USUniversity of California, Irvine · USUniversity of California, Los Angeles · USUniversity of North Carolina at Chapel Hill · USCoalition for Research in Women's Health · CADanish Cancer Society · DK

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Hormone-Related CancersZIACP010126 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI GIERACH, GRETCHEN · 2009 to 2025
$103.5M
Use of microfluidic tumor cultures to enable clinical trials of therapies for ovarian cancerP50CA136393 · NCI · MAYO CLINIC ROCHESTER · PI Zhenkun Lou · 2009 to 2026
$37.0M
Novel Serum, Plasma, and Urine Biomarkers of Ovarian CanP50CA105009 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CRAMER, DANIEL WILLIAM · 2004 to 2010
$13.3M
Haplotype-Based Genome Screen for Ovarian Cancer LociR01CA114343 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI SELLERS, THOMAS A · 2007 to 2011
$7.5M
OVARIAN CANCER RISK AND HYPERGONADOTROPIC HYPOGONADISMR01CA054419 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI CRAMER, DANIEL WILLIAM · 1992 to 2007
$5.9M
COLLABORATIVE STUDY OF OVARIAN CANCER IN TWO RISK GROUPSR01CA058598 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI GOODMAN, MARC T · 1993 to 2012
$4.6M
Epidemiology of Ovarian Cancer:New HypothesesR01CA087538 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ROSSING, MARY ANNE · 2002 to 2006
$3.5M
Steroid Hormone Genes and Ovarian Cancer RiskR01CA112523 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ROSSING, MARY ANNE · 2006 to 2010
$3.3M
HEREDITARY BREAST CANCER--GENETIC AND MOLECULAR STUDIESR01CA058860 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANTON-CULVER, HODA A · 1994 to 2008
$3.1M
Genetic Variation in the NF-kappaB Pathway and Ovarian Cancer EtiologyR01CA122443 · NCI · MAYO CLINIC ROCHESTER · PI GOODE, ELLEN L. · 2007 to 2012
$2.7M
HEREDITARY BREAST CANCER--GENETIC AND MOLECULAR STUDIESU01CA058860 · NCI · UNIVERSITY OF CALIFORNIA IRVINE · PI ANTON-CULVER, HODA A. · 1997 to 2002
$2.5M
Cancer Research UK 10118Cancer Research UK 10119Cancer Research UK 10124Cancer Research UK 11021Cancer Research UK 11022Cancer Research UK 19275Cancer Research UK A10119Cancer Research UK A10124Cancer Research UK A6187Cancer Research UK A8339Department of HealthMedical Research Council G0000934Medical Research Council G0801875NCI NIH HHS CA16056NCI NIH HHS CA-58860NCI NIH HHS CA71766NCI NIH HHS CA-92044NCI NIH HHS K07 CA092044NCI NIH HHS N01-CN-55424NCI NIH HHS N01 PC035137NCI NIH HHS N01-PC-35137NCI NIH HHS P30 CA016056NCI NIH HHS P50 CA105009NCI NIH HHS P50 CA136393NCI NIH HHS R01 CA054419NCI NIH HHS R01 CA058598NCI NIH HHS R01 CA058860NCI NIH HHS R01 CA087538NCI NIH HHS R01 CA112523NCI NIH HHS R01 CA114343NCI NIH HHS R01CA114343NCI NIH HHS R01 CA122443NCI NIH HHS R01-CA-122443NCI NIH HHS R01-CA- 58598NCI NIH HHS R01 CA61107NCI NIH HHS R01 CA87538NCI NIH HHS U01 CA058860
6 · The paper itself

Abstract

Epithelial ovarian cancer has a major heritable component, but the known susceptibility genes explain less than half the excess familial risk. We performed a genome-wide association study (GWAS) to identify common ovarian cancer susceptibility alleles. We evaluated 507,094 SNPs genotyped in 1,817 cases and 2,353 controls from the UK and approximately 2 million imputed SNPs. We genotyped the 22,790 top ranked SNPs in 4,274 cases and 4,809 controls of European ancestry from Europe, USA and Australia. We identified 12 SNPs at 9p22 associated with disease risk (P < 10(-8)). The most significant SNP (rs3814113; P = 2.5 x 10(-17)) was genotyped in a further 2,670 ovarian cancer cases and 4,668 controls, confirming its association (combined data odds ratio (OR) = 0.82, 95% confidence interval (CI) 0.79-0.86, P(trend) = 5.1 x 10(-19)). The association differs by histological subtype, being strongest for serous ovarian cancers (OR 0.77, 95% CI 0.73-0.81, P(trend) = 4.1 x 10(-21)).

Indexed as

Chromosomes, Human, Pair 9Genetic Predisposition to DiseaseGenome-Wide Association StudyAllelesAustraliaBase SequenceCase-Control StudiesChromosome MappingConfidence IntervalsEuropeFemaleGene FrequencyGenotypeHaplotypesHeterozygoteHomozygote

Identifiers

PMID19648919
PMCPMC2844110
OpenAlexW2137186819

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.