Evidence map›Paper›PMID 19648297›Full record

ArticleThe Plant cell2009

Partitioning the apical domain of the Arabidopsis embryo requires the BOBBER1 NudC domain protein.

Rebecca Joy Jurkuta, Nicholas J Kaplinsky, Jennifer E Spindel, M Kathryn Barton

Abstract read
In one paragraph

Article in The Plant cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
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  10. Overexpression of theFrontiers in plant science · 2020
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  14. Genetic Interactions BetweenG3 (Bethesda, Md.) · 2018
    Article
  15. A Method for Characterizing Embryogenesis in Arabidopsis.Journal of visualized experiments : JoVE · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Rebecca Joy JurkutaDepartment of Genetics, University of Wisconsin, Madison, Wisconsin 53706, USA.
Nicholas J Kaplinsky
Jennifer E Spindel
M Kathryn Barton

Funding

Pattern formation during Arabidopsis embryogenesisF32GM070137 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI KAPLINSKY, NICHOLAS J · 2004 to 2005
$77k
NIGMS NIH HHS F32 GM070137
6 · The paper itself

Abstract

The apical domain of the embryo is partitioned into distinct regions that will give rise to the cotyledons and the shoot apical meristem. In this article, we describe a novel screen to identify Arabidopsis thaliana embryo arrest mutants that are defective in this partitioning, and we describe the phenotype of one such mutant, bobber1. bobber1 mutants arrest at the globular stage of development, they express the meristem-specific SHOOTMERISTEMLESS gene throughout the top half of the embryo, and they fail to express the AINTEGUMENTA transcript normally found in cotyledons. Thus, BOBBER1 is required to limit the extent of the meristem domain and/or to promote the development of the cotyledon domains. Based on expression of early markers for apical development, bobber1 mutants differentiate protodermis and undergo normal early apical development. Consistent with a role for auxin in cotyledon development, BOBBER1 mutants fail to express localized maxima of the DR5:green fluorescent protein reporter. BOBBER1 encodes a protein with homology to the Aspergillus nidulans protein NUDC that has similarity to protein chaperones, indicating a possible role for BOBBER1 in synthesis or transport of proteins involved in patterning the Arabidopsis embryo.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsFungal ProteinsGene Expression Regulation, PlantIn Situ HybridizationMicroscopy, ConfocalMolecular Sequence DataPlants, Genetically ModifiedProtein Structure, TertiarySeedsSequence Analysis, DNASequence Homology, Amino AcidArabidopsis ProteinsFungal Proteins

Identifiers

PMID19648297
PMCPMC2729608

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.