Evidence map›Paper›PMID 19647519›Full record

ArticleMolecular cell2009

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.

Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 372 papers.

0numbers the graph read from it
0cells of the map it votes in
372citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

372 citing papers in PubMed, 566 citations in OpenAlex.

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  19. TheLife (Basel, Switzerland) · 2025
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312 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Renee D PaulsenDepartment of Chemical and Systems Biology, Stanford University, Stanford, CA 94305, USA.
Deena V Soni
Roy Wollman
Angela T Hahn
Muh-Ching Yee
Anna Guan
Jayne A Hesley
Steven C Miller
Evan F Cromwell
David E Solow-Cordero
Tobias Meyer
Karlene A Cimprich
Stanford University · USHigh Throughput Biology (United States) · US

Funding

Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Regulation of the DNA Damage ResponseR01ES016486 · NIEHS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2007 to 2025
$6.2M
Identifying Novel Mechanisms and Regulators of Genome StabilityR21ES016867 · NIEHS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2008 to 2009
$503k
Regulation of the DNA damage ResponseR56ES016486 · NIEHS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2024 to 2024
$500k
NCI NIH HHS T32 CA009302NIEHS NIH HHS ES016486NIEHS NIH HHS ES016867NIEHS NIH HHS R01 ES016486NIEHS NIH HHS R21 ES016867NIEHS NIH HHS R56 ES016486
6 · The paper itself

Abstract

Signaling pathways that respond to DNA damage are essential for the maintenance of genome stability and are linked to many diseases, including cancer. Here, a genome-wide siRNA screen was employed to identify additional genes involved in genome stabilization by monitoring phosphorylation of the histone variant H2AX, an early mark of DNA damage. We identified hundreds of genes whose downregulation led to elevated levels of H2AX phosphorylation (gammaH2AX) and revealed links to cellular complexes and to genes with unclassified functions. We demonstrate a widespread role for mRNA-processing factors in preventing DNA damage, which in some cases is caused by aberrant RNA-DNA structures. Furthermore, we connect increased gammaH2AX levels to the neurological disorder Charcot-Marie-Tooth (CMT) syndrome, and we find a role for several CMT proteins in the DNA-damage response. These data indicate that preservation of genome stability is mediated by a larger network of biological processes than previously appreciated.

Indexed as

Genomic InstabilitySignal TransductionCharcot-Marie-Tooth DiseaseComputational BiologyDNA DamageDNA RepairDNA ReplicationDown-RegulationGenes, cdcGenomic LibraryGenomicsHeLa CellsHistonesHumansPhosphorylationRNA, MessengerHistonesRNA, MessengerRNA, Small Interfering

Identifiers

PMID19647519
PMCPMC2772893
OpenAlexW2035300822

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.