Evidence map›Paper›PMID 19646260›Full record

ArticleBMC evolutionary biology2009

The sea lamprey Petromyzon marinus genome reveals the early origin of several chemosensory receptor families in the vertebrate lineage.

Scot Libants, Kevin Carr, Hong Wu, John H Teeter, Yu-Wen Chung-Davidson, Ziping Zhang, Curt Wilkerson, Weiming Li

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Behavioral, Endocrine, and Neuronal Responses to Odors in Lampreys.Animals : an open access journal from MDPI · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Olfactory-induced locomotion in lampreys.Cell and tissue research · 2022
    Review
  9. Article
  10. Review
  11. Coding of pheromones by vomeronasal receptors.Cell and tissue research · 2021
    Review
  12. Review
  13. Article
  14. TAAR Agonists.Cellular and molecular neurobiology · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Excreted Steroids in Vertebrate Social Communication.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Scot LibantsDepartment of Fisheries and Wildlife, Michigan State University, East Lansing, MI 48824, USA. libants@msu.edu
Kevin Carr
Hong Wu
John H Teeter
Yu-Wen Chung-Davidson
Ziping Zhang
Curt Wilkerson
Weiming Li
Michigan State University · USMichigan Department of Natural Resources · USMonell Chemical Senses Center · US

Funding

MECHANISMS OF OLFACTORY TRANSDUCTIONR01DC004718 · NIDCD · MONELL CHEMICAL SENSES CENTER · PI TEETER, JOHN H · 2001 to 2003
$687k
NIDCD NIH HHS 5 R01 DC04718-03NIDCD NIH HHS R01 DC004718
6 · The paper itself

Abstract

backgroundIn gnathostomes, chemosensory receptors (CR) expressed in olfactory epithelia are encoded by evolutionarily dynamic gene families encoding odorant receptors (OR), trace amine-associated receptors (TAAR), V1Rs and V2Rs. A limited number of OR-like sequences have been found in invertebrate chordate genomes. Whether these gene families arose in basal or advanced vertebrates has not been resolved because these families have not been examined systematically in agnathan genomes.

resultsPetromyzon is the only extant jawless vertebrate whose genome has been sequenced. Known to be exquisitely sensitive to several classes of odorants, lampreys detect fewer amino acids and steroids than teleosts. This reduced number of detectable odorants is indicative of reduced numbers of CR gene families or a reduced number of genes within CR families, or both, in the sea lamprey. In the lamprey genome we identified a repertoire of 59 intact single-exon CR genes, including 27 OR, 28 TAAR, and four V1R-like genes. These three CR families were expressed in the olfactory organ of both parasitic and adult life stages.

conclusionAn extensive search in the lamprey genome failed to identify potential orthologs or pseudogenes of the multi-exon V2R family that is greatly expanded in teleost genomes, but did find intact calcium-sensing receptors (CASR) and intact metabotropic glutamate receptors (MGR). We conclude that OR and V1R arose in chordates after the cephalochordate-urochordate split, but before the diversification of jawed and jawless vertebrates. The advent and diversification of V2R genes from glutamate receptor-family G protein-coupled receptors, most likely the CASR, occurred after the agnathan-gnathostome divergence.

Indexed as

Evolution, MolecularMultigene FamilyAnimalsComputational BiologyDNA, ComplementaryGenomeLife Cycle StagesPetromyzonPhylogenyReceptors, Calcium-SensingReceptors, GlutamateReceptors, OdorantSequence Analysis, DNADNA, ComplementaryReceptors, Calcium-SensingReceptors, GlutamateReceptors, Odorant

Identifiers

PMID19646260
PMCPMC2728731
OpenAlexW2080568084

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.