Evidence map›Paper›PMID 19641057›Full record

ArticleJournal of clinical microbiology2009

Detection of Enterobacter sakazakii and other pathogens associated with infant formula powder by use of a DNA microarray.

Min Wang, Boyang Cao, Qili Gao, Yamin Sun, Pei Liu, Lu Feng, Lei Wang

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Diversity and Antibiotic Susceptibility ofFrontiers in microbiology · 2018
    Article
  3. Article
  4. Article
  5. A review on detection methods used for foodborne pathogens.The Indian journal of medical research · 2016
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Min WangTEDA School of Biological Sciences and Biotechnology, Nankai University, 23 HongDa St., TEDA, Tianjin 300457, China.
Boyang Cao
Qili Gao
Yamin Sun
Pei Liu
Lu Feng
Lei Wang

Funding

Microbiome and intestinal innate immune response in alcoholic liver diseaseR01AA020703 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SCHNABL, BERND G. · 2011 to 2020
$3.6M
Microbiome and Intestinal Innate Immune Response in Alcoholic Liver DiseaseR37AA020703 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bernd G. Schnabl · 2021 to 2026
$2.5M
NIAAA NIH HHS R01 AA020703NIAAA NIH HHS R37 AA020703
6 · The paper itself

Abstract

Pathogen detection is critical to the process of generating and testing powdered infant formula (PIF). An obstacle associated with PIF microbial surveillance is that most current procedures are time-consuming and labor-intensive. We have developed a rapid, DNA microarray-based detection technique to identify 10 different pathogenic bacteria associated with PIF contamination based on the 16S-23S rRNA gene internal transcribed spacer (ITS) sequences and wzy (O antigen polymerase) gene. Using this procedure, Enterobacter sakazakii, Salmonella enterica, Klebsiella pneumoniae, Klebsiella oxytoca, Serratia marcescens, Acinetobacter baumannii, Bacillus cereus, Listeria monocytogenes, Staphylococcus aureus, and Escherichia coli O157 were identified. One hundred eighty-five strains were used to validate the microarray assay (including 134 target pathogen strains and 51 closely related bacteria). Twenty-seven probes reproducibly detected multiple pathogens with high specificity and sensitivity (0.100 ng genomic DNA or 10(4) CFU/ml). Twenty-one real PIF samples were tested by the microarray with 100% accuracy. The data presented reveal that the designed oligonucleotide microarray is a promising method for basic microbiology, clinical diagnosis, food safety, and epidemiological surveillance.

Indexed as

Food MicrobiologyInfant FormulaBacteriological TechniquesCronobacter sakazakiiDNA, BacterialDNA, Ribosomal SpacerGram-Negative BacteriaGram-Positive BacteriaHumansMicroarray AnalysisMolecular Sequence DataOligonucleotide Array Sequence AnalysisOligonucleotide ProbesReproducibility of ResultsSensitivity and SpecificitySequence Analysis, DNADNA, BacterialDNA, Ribosomal SpacerOligonucleotide Probes

Identifiers

PMID19641057
PMCPMC2756907

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.