Evidence map›Paper›PMID 19640843›Full record

ArticleThe Journal of biological chemistry2009

Mechanism of cyclizing NAD to cyclic ADP-ribose by ADP-ribosyl cyclase and CD38.

Richard Graeff, Qun Liu, Irina A Kriksunov, Masayo Kotaka, Norman Oppenheimer, Quan Hao, Hon Cheung Lee

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 82 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Synthesis of site-specific Fab-drug conjugates using ADP-ribosyl cyclases.Protein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Review
  7. Enzymology of CaCells · 2023
    Review
  8. Pangenomic analysis reveals plant NADProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Small Molecule CD38 Inhibitors: Synthesis of 8-Amino-Molecules (Basel, Switzerland) · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. NADFrontiers in physiology · 2020
    Review
  19. Resolving the topological enigma in CaThe Journal of biological chemistry · 2019
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Richard GraeffDepartment of Physiology, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Qun Liu
Irina A Kriksunov
Masayo Kotaka
Norman Oppenheimer
Quan Hao
Hon Cheung Lee
Cornell University · USUniversity of Hong Kong · HKUniversity of Minnesota · USUniversity of California, San Francisco · US

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
Structure and Functions of CD38R01GM061568 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GRAEFF, RICHARD M · 2000 to 2009
$2.7M
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR01646NIGMS NIH HHS DMR-0225180NIGMS NIH HHS GM061568NIGMS NIH HHS R01 GM061568
6 · The paper itself

Abstract

Mammalian CD38 and its Aplysia homolog, ADP-ribosyl cyclase (cyclase), are two prominent enzymes that catalyze the synthesis and hydrolysis of cyclic ADP-ribose (cADPR), a Ca(2+) messenger molecule responsible for regulating a wide range of cellular functions. Although both use NAD as a substrate, the cyclase produces cADPR, whereas CD38 produces mainly ADP-ribose (ADPR). To elucidate the catalytic differences and the mechanism of cyclizing NAD, the crystal structure of a stable complex of the cyclase with an NAD analog, ribosyl-2'F-2'deoxynicotinamide adenine dinucleotide (ribo-2'-F-NAD), was determined. The results show that the analog was a substrate of the cyclase and that during the reaction, the nicotinamide group was released and a stable intermediate was formed. The terminal ribosyl unit at one end of the intermediate formed a close linkage with the catalytic residue (Glu-179), whereas the adenine ring at the other end stacked closely with Phe-174, suggesting that the latter residue is likely to be responsible for folding the linear substrate so that the two ends can be cyclized. Mutating Phe-174 indeed reduced cADPR production but enhanced ADPR production, converting the cyclase to be more CD38-like. Changing the equivalent residue in CD38, Thr-221 to Phe, correspondingly enhanced cADPR production, and the double mutation, Thr-221 to Phe and Glu-146 to Ala, effectively converted CD38 to a cyclase. This study provides the first detailed evidence of the cyclization process and demonstrates the feasibility of engineering the reactivity of the enzymes by mutation, setting the stage for the development of tools to manipulate cADPR metabolism in vivo.

Indexed as

ADP-ribosyl Cyclase 1AnimalsBiocatalysisCalciumChromatography, High Pressure LiquidCrystallography, X-RayCyclic ADP-RiboseCyclizationModels, MolecularMutagenesis, Site-DirectedMutationNADProtein ConformationProtein EngineeringSubstrate SpecificityADP-ribosyl Cyclase 1CalciumCyclic ADP-RiboseNAD

Identifiers

PMID19640843
PMCPMC2785691
OpenAlexW2130494719

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.