Evidence map›Paper›PMID 19638594›Full record

ArticleCancer research2009

Epigenetic repression of DNA mismatch repair by inflammation and hypoxia in inflammatory bowel disease-associated colorectal cancer.

Robert A Edwards, Mavee Witherspoon, Kehui Wang, Kambiz Afrasiabi, Trang Pham, Lutz Birnbaumer, Steven M Lipkin

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 77 citations in OpenAlex.

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  16. Mechanisms of DNA damage, repair, and mutagenesis.Environmental and molecular mutagenesis · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Robert A EdwardsDepartment of Pathology, University of California-Irvine, Irvine, California 92697-4800, USA. redwards@uci.edu
Mavee Witherspoon
Kehui Wang
Kambiz Afrasiabi
Trang Pham
Lutz Birnbaumer
Steven M Lipkin
University of California, Irvine · USNational Institute of Environmental Health Sciences · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Transmembrane Signaling MechanismsZIGES101643 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BIRNBAUMER, LUTZ · 2009 to 2010
$5.3M
Transmembrane Signaling MechanismsZ01ES101643 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BIRNBAUMER, LUTZ · 2003 to 2008
$5.1M
DNA Mismatch Repair and associated genes in suppression of GI adenomas and carcinR01CA098626 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LIPKIN, STEVEN M · 2004 to 2014
$2.9M
Chemokine Signaling and Colitis in Gia2 Deficient MiceK08DK059816 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDWARDS, ROBERT ANDREW · 2002 to 2006
$610k
Protanoids, Colitis, and Colon Cancer in Gia2-KO miceR21DK071591 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDWARDS, ROBERT ANDREW · 2007 to 2008
$414k
Mismatch Repair and Associated Genes in Suppression of GI Adenomas and CarcinomasR56CA098626 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LIPKIN, STEVEN M · 2009 to 2009
$249k
Intramural NIH HHS Z01 ES101643NCI NIH HHS CA98626NCI NIH HHS P30 CA062203NCI NIH HHS R01 CA098626NCI NIH HHS R56 CA098626NIDDK NIH HHS K08 DK059816NIDDK NIH HHS K08 DK59816NIDDK NIH HHS R21 DK071591
6 · The paper itself

Abstract

Sporadic human mismatch repair (MMR)-deficient colorectal cancers account for approximately 12.5% of all cases of colorectal cancer. MMR-deficient colorectal cancers are classically characterized by right-sided location, multifocality, mucinous histology, and lymphocytic infiltration. However, tumors in germ-line MMR-deficient mouse models lack these histopathologic features. Mice lacking the heterotrimeric G protein alpha subunit Gialpha2 develop chronic colitis and multifocal, right-sided cancers with mucinous histopathology, similar to human MMR-deficient colorectal cancer. Young Gialpha2-/- colonic epithelium has normal MMR expression but selectively loses MLH1 and consequently PMS2 expression following inflammation. Gialpha2-/- cancers have microsatellite instability. Mlh1 is epigenetically silenced not by promoter hypermethylation but by decreased histone acetylation. Chronically inflamed Gialpha2-/- colonic mucosa contains patchy hypoxia, with increased crypt expression of the hypoxia markers DEC-1 and BNIP3. Chromatin immunoprecipitation identified increased binding of the transcriptional repressor DEC-1 to the proximal Mlh1 promoter in hypoxic YAMC cells and colitic Gialpha2-/- crypts. Treating Gialpha2-/- mice with the histone deacetylase inhibitor suberoylanilide hydroxamic acid significantly decreased colitis activity and rescued MLH1 expression in crypt epithelial cells, which was associated with increased acetyl histone H3 levels and decreased DEC-1 binding at the proximal Mlh1 promoter, consistent with a histone deacetylase-dependent mechanism. These data link chronic hypoxic inflammation, epigenetic MMR protein down-regulation, development of MMR-deficient colorectal cancer, and the firstmouse model of somatically acquired MMR-deficient colorectal cancer.

Indexed as

Adaptor Proteins, Signal TransducingAdenomaAdenosine TriphosphatasesAnimalsCell HypoxiaColorectal NeoplasmsDNA-Binding ProteinsDNA Mismatch RepairDNA Repair EnzymesDrug Evaluation, PreclinicalEnzyme InhibitorsEpigenesis, GeneticGene Expression Regulation, NeoplasticGene SilencingGTP-Binding Protein alpha Subunit, Gi2Histone Deacetylase InhibitorsAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesDNA-Binding ProteinsDNA Repair EnzymesEnzyme InhibitorsGTP-Binding Protein alpha Subunit, Gi2Histone Deacetylase InhibitorsHydroxamic AcidsMismatch Repair Endonuclease PMS2Mlh1 protein, mouseMutL Protein Homolog 1Nuclear ProteinsPms2 protein, mouseVorinostat

Identifiers

PMID19638594
PMCPMC2748849
OpenAlexW2171888610

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.