Evidence map›Paper›PMID 19638173›Full record

ArticleEnvironmental microbiology2009

Lifestyle of Lactobacillus plantarum in the mouse caecum.

Maria L Marco, Theodorus H F Peters, Roger S Bongers, Douwe Molenaar, Saskia van Hemert, Justin L Sonnenburg, Jeffrey I Gordon, Michiel Kleerebezem

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 108 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. The importance of host physical niches for the stability of gut microbiome composition.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  6. Article
  7. Frontiers in nutrition · 2024
    Article
  8. Article
  9. Article
  10. The Effect of Tannin-Rich Witch Hazel on Growth of ProbioticAntibiotics (Basel, Switzerland) · 2022
    Article
  11. Article
  12. mSystems · 2021
    Article
  13. Dietary Inulin IncreasesApplied and environmental microbiology · 2021
    Article
  14. mBio · 2021
    Article
  15. Article
  16. Gut microbes · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Stress Physiology of Lactic Acid Bacteria.Microbiology and molecular biology reviews : MMBR · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Maria L MarcoTI Food and Nutrition, Nieuwe Kanaal 9A, 6709 PA, Wageningen, The Netherlands.
Theodorus H F Peters
Roger S Bongers
Douwe Molenaar
Saskia van Hemert
Justin L Sonnenburg
Jeffrey I Gordon
Michiel Kleerebezem
Nederlands Instituut Voor Zuivel Oonderzoek · NLTiFN · NLWashington University in St. Louis · US

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
GNOTOBIOTIC TRANSGENIC MODELS OF THE GASTRIC ECOSYSTEMR01DK058529 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 2001 to 2010
$3.5M
NIDDK NIH HHS DK52574NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK058529NIDDK NIH HHS R01 DK085025
6 · The paper itself

Abstract

Lactobacillus plantarum is a common inhabitant of mammalian gastrointestinal tracts. Strains of L. plantarum are also marketed as probiotics intended to confer beneficial health effects upon delivery to the human gut. To understand how L. plantarum adapts to its gut habitat, we used whole genome transcriptional profiling to characterize the transcriptome of strain WCFS1 during colonization of the caeca of adult germ-free C57Bl/6 J mice fed a standard low-fat rodent chow diet rich in complex plant polysaccharides or a prototypic Western diet high in simple sugars and fat. Lactobacillus plantarum colonized the digestive tracts of these animals to high levels, although L. plantarum was found in 10-fold higher amounts in the caeca of mice fed the standard chow. Metabolic reconstructions based on the transcriptional data sets revealed that genes involved in carbohydrate transport and metabolism form the principal functional group that is upregulated in vivo compared with exponential phase cells grown in three different culture media, and that a Western diet provides a more nutritionally restricted, growth limiting milieu for the microbe in the distal gut. A set of bacterial genes encoding cell surface-related functions were differentially regulated in both groups of mice. This set included downregulated genes required for the d-alanylation of lipoteichoic acids, extracellular structures of L. plantarum that mediate interactions with the host immune system. These results, obtained in a reductionist gnotobiotic mouse model of the gut ecosystem, provide insights about the niches (professions) of this lactic acid bacterium, and a context for systematically testing features that affect epithelial and immune cell responses to this organism in the digestive tract.

Indexed as

Adaptation, PhysiologicalAnimal FeedAnimalsCecumCell ProliferationDietary CarbohydratesEcosystemGene Expression ProfilingGene Expression Regulation, BacterialGenome, BacterialHumansLactiplantibacillus plantarumMetabolic Networks and PathwaysMiceMice, Inbred C57BLRNA, BacterialDietary CarbohydratesRNA, Bacterial

Identifiers

PMID19638173
PMCPMC2978903
OpenAlexW2123771309

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.