Evidence map›Paper›PMID 19636342›Full record

ReviewNature reviews. Genetics2009

Genetics of human gene expression: mapping DNA variants that influence gene expression.

Vivian G Cheung, Richard S Spielman

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed, 1 pooled it
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 1 synthesis or guideline pooled it, 237 citations in OpenAlex.

  1. Multiancestry Transcriptome-Wide Association Study Identifies Candidate Genes Associated with Hepatoblastoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Pooled it
  2. Trial
  3. Trial
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. bioRxiv : the preprint server for biology · 2025
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Vivian G CheungHoward Hughes Medical Institute, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA. vcheung@mail.med.upenn.edu
Richard S Spielman
Howard Hughes Medical Institute · USUniversity of Pennsylvania · US

Funding

Genome-wide analysis of genetic variation and expression.R01GM081930 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHEUNG, VIVIAN G · 2007 to 2010
$3.2M
Genetics of individual variation in response to radiation exposureR01ES015733 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI CHEUNG, VIVIAN G · 2007 to 2011
$2.3M
Howard Hughes Medical InstituteNIEHS NIH HHS R01 ES015733NIGMS NIH HHS R01 GM081930
6 · The paper itself

Abstract

There is extensive natural variation in human gene expression. As quantitative phenotypes, expression levels of genes are heritable. Genetic linkage and association mapping have identified cis- and trans-acting DNA variants that influence expression levels of human genes. New insights into human gene regulation are emerging from genetic analyses of gene expression in cells at rest and following exposure to stimuli. The integration of these genetic mapping results with data from co-expression networks is leading to a better understanding of how expression levels of individual genes are regulated and how genes interact with each other. These findings are important for basic understanding of gene regulation and of diseases that result from disruption of normal gene regulation.

Indexed as

Chromosome MappingEpistasis, GeneticGene Expression RegulationGenetic LinkageGenetic VariationHumansModels, Biological

Identifiers

PMID19636342
PMCPMC2989458
OpenAlexW1992088789

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.