Evidence map›Paper›PMID 19635936›Full record

ArticleGenetics2009

Phenotypic consequences of purine nucleotide imbalance in Saccharomyces cerevisiae.

Christelle Saint-Marc, Benoît Pinson, Fanny Coulpier, Laurent Jourdren, Olesia Lisova, Bertrand Daignan-Fornier

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Purine metabolism in plant pathogenic fungi.Frontiers in microbiology · 2024
    Review
  5. Genetic interaction between RLM1 and F-box motif encoding gene SAF1 contributes to stress response in Saccharomyces cerevisiae.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  6. Article
  7. Dual control of NADeLife · 2019
    Article
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  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Christelle Saint-MarcUniversité de Bordeaux, Institut de Biochimie et Génétique Cellulaires, 33077 Bordeaux, France.
Benoît Pinson
Fanny Coulpier
Laurent Jourdren
Olesia Lisova
Bertrand Daignan-Fornier
Université de Bordeaux · FRÉcole Normale Supérieure - PSL · FRInstitut de Biochimie et Génétique Cellulaires · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coordinating homeostasis of multiple metabolites is a major task for living organisms, and complex interconversion pathways contribute to achieving the proper balance of metabolites. AMP deaminase (AMPD) is such an interconversion enzyme that allows IMP synthesis from AMP. In this article, we show that, under specific conditions, lack of AMPD activity impairs growth. Under these conditions, we found that the intracellular guanylic nucleotide pool was severely affected. In vivo studies of two AMPD homologs, Yjl070p and Ybr284p, indicate that these proteins have no detectable AMP, adenosine, or adenine deaminase activity; we show that overexpression of YJL070c instead mimics a loss of AMPD function. Expression of the yeast transcriptome was monitored in a AMPD-deficient mutant in a strain overexpressing YJL070c and in cells treated with the immunosuppressive drug mycophenolic acid, three conditions that lead to severe depletion of the guanylic nucleotide pool. These three conditions resulted in the up- or downregulation of multiple transcripts, 244 of which are common to at least two conditions and 71 to all three conditions. These transcriptome results, combined with specific mutant analysis, point to threonine metabolism as exquisitely sensitive to the purine nucleotide balance.

Indexed as

AMP DeaminaseBiosynthetic PathwaysCell DivisionGene Expression ProfilingGene Expression Regulation, FungalGuanosine DiphosphateGuanosine TriphosphateInosine MonophosphateMutationMycophenolic AcidPhenotypePurine NucleotidesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThreonineAMP DeaminaseGuanosine DiphosphateGuanosine TriphosphateInosine MonophosphateMycophenolic AcidPurine NucleotidesSaccharomyces cerevisiae ProteinsThreonine

Identifiers

PMID19635936
PMCPMC2766314
OpenAlexW1974785470

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.