Evidence map›Paper›PMID 19633089›Full record

ArticleJournal of bacteriology2009

Feedback control of DnaA-mediated replication initiation by replisome-associated HdaA protein in Caulobacter.

Justine Collier, Lucy Shapiro

Abstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. TheJournal of bacteriology · 2023
    Article
  5. ThebioRxiv : the preprint server for biology · 2023
    Article
  6. IHF and Fis asInternational journal of molecular sciences · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Riboswitch theo/Microorganisms · 2021
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Multilayered control of chromosome replication inBiochemical Society transactions · 2019
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Justine CollierDepartment of Fundamental Microbiology, Faculty of Biology and Medicine, University of Lausanne, Quartier UNIL/Sorge, Lausanne, CH 1015, Switzerland. Justine.collier@unil.ch
Lucy Shapiro
Stanford University · USUniversity of Lausanne · CH

Funding

DEVELOPMENT CONTROL OF DNA REPLICATION IN CAULOBACTERR01GM051426 · NIGMS · STANFORD UNIVERSITY · PI SHAPIRO, LUCILLE · 1994 to 2013
$3.8M
3D Chromosome/Replisome Positioning in Bacterial CellsR24GM073011 · NIGMS · STANFORD UNIVERSITY · PI SHAPIRO, LUCILLE · 2005 to 2008
$1.5M
NIGMS NIH HHS R01 GM051426NIGMS NIH HHS R01 GM51426NIGMS NIH HHS R24 GM073011NIGMS NIH HHS R24GM073011-04
6 · The paper itself

Abstract

Chromosome replication in Caulobacter crescentus is tightly regulated to ensure that initiation occurs at the right time and only once during the cell cycle. The timing of replication initiation is controlled by both CtrA and DnaA. CtrA binds to and silences the origin. Upon the clearance of CtrA from the cell, the DnaA protein accumulates and allows loading of the replisome at the origin. Here, we identify an additional layer of replication initiation control that is mediated by the HdaA protein. In Escherichia coli, the Hda protein inactivates DnaA after replication initiation. We show that the Caulobacter HdaA homologue is necessary to restrict the initiation of DNA replication to only once per cell cycle and that it dynamically colocalizes with the replisome throughout the cell cycle. Moreover, the transcription of hdaA is directly activated by DnaA, providing a robust feedback regulatory mechanism that adjusts the levels of HdaA to inactivate DnaA.

Indexed as

DNA ReplicationGene Expression Regulation, BacterialAdenosine TriphosphatasesBacterial ProteinsCaulobacter crescentusCell CycleCulture MediaDNA, BacterialDNA-Binding ProteinsPromoter Regions, GeneticTranscription FactorsAdenosine TriphosphatasesBacterial ProteinsCtrA protein, CaulobacterCulture MediaDnaA protein, BacteriaDNA, BacterialDNA-Binding ProteinsTranscription Factors

Identifiers

PMID19633089
PMCPMC2737981
OpenAlexW2024152079

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.