Evidence map›Paper›PMID 19633080›Full record

ArticleJournal of bacteriology2009

Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5.

Michael A Mullins, Karen B Register, Darrell O Bayles, Crystal L Loving, Tracy L Nicholson, Susan L Brockmeier, David W Dyer, Gregory J Phillips

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Molecular Characterization and Phylogenetic Analysis ofPathogens (Basel, Switzerland) · 2023
    Article
  3. Screening of linear B-cell epitopes and its proinflammatory activities ofFrontiers in cellular and infection microbiology · 2023
    Article
  4. Article
  5. Article
  6. Comparison of multilocus sequence types found among North American isolates ofJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2019
    Article
  7. Association betweenPeerJ · 2019
    Article
  8. Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Michael A MullinsRespiratory Diseases of Livestock Research Unit, USDA Agricultural Research Service National Animal Disease Center, Ames, IA 50010, USA.
Karen B Register
Darrell O Bayles
Crystal L Loving
Tracy L Nicholson
Susan L Brockmeier
David W Dyer
Gregory J Phillips
Agricultural Research Service · USIowa State University · USUniversity of Oklahoma Health Sciences Center · US

Funding

VACCINE-TARGETED IDENTIFICATION OF FITNESS DETERMINANTS IN THE HIV-1 ENVELOPEP20RR016478 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI LEWIS, SHARON A · 2001 to 2011
$35.8M
NCRR NIH HHS P20 RR016478PHS HHS P2PRR016478
6 · The paper itself

Abstract

Haemophilus parasuis is a swine pathogen of significant industry concern, but little is known about how the organism causes disease. A related human pathogen, Haemophilus influenzae, has been better studied, and many of its virulence factors have been identified. Two of these, outer membrane proteins P2 and P5, are known to have important virulence properties. The goals of this study were to identify, analyze, and compare the genetic relatedness of orthologous genes encoding P2 and P5 proteins in a diverse group of 35 H. parasuis strains. Genes encoding P2 and P5 proteins were detected in all H. parasuis strains evaluated. The predicted amino acid sequences for both P2 and P5 proteins exhibit considerable heterogeneity, particularly in regions corresponding to predicted extracellular loops. Twenty-five variants of P2 and 17 variants of P5 were identified. The P2 proteins of seven strains were predicted to contain a highly conserved additional extracellular loop compared to the remaining strains and to H. influenzae P2. Antigenic-site predictions coincided with predicted extracellular loop regions of both P2 and P5. Neighbor-joining trees constructed using P2 and P5 sequences predicted divergent evolutionary histories distinct from those predicted by a multilocus sequence typing phylogeny based on partial sequencing of seven housekeeping genes. Real-time reverse transcription-PCR indicated that both genes are expressed in all of the strains.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsBlotting, SouthernHaemophilus parasuisMolecular Sequence DataPhylogenyPolymerase Chain ReactionProtein Structure, SecondarySequence Analysis, DNABacterial Outer Membrane Proteins

Identifiers

PMID19633080
PMCPMC2747881
OpenAlexW2058376171

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.