Evidence map›Paper›PMID 19631266›Full record

ArticleGenomics2009

A genome-wide screen in Saccharomyces cerevisiae reveals pathways affected by arsenic toxicity.

Xue Zhou, Adriana Arita, Thomas P Ellen, Xin Liu, Jingxiang Bai, John P Rooney, Adrienne D Kurtz, Catherine B Klein, Wei Dai, Thomas J Begley and 1 more

Abstract read
In one paragraph

Article in Genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

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  6. A genome-wide screen inmicroPublication biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Xue ZhouNelson Institute of Environmental Medicine, New York University School of Medicine, Tuxedo, NY 10987, USA.
Adriana Arita
Thomas P Ellen
Xin Liu
Jingxiang Bai
John P Rooney
Adrienne D Kurtz
Catherine B Klein
Wei Dai
Thomas J Begley
Max Costa
New York University · USUniversity at Albany, State University of New York · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
RESEARCH IN ENVIRONMENTAL HEALTH SCIENCES (CENTER GRANT)P30ES000260 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 1985 to 2020
$26.1M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007324 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CUDDAPAH, SURESH · 1999 to 2025
$5.8M
Carcinogenesis of Nickel and Epigenetic ControlR01ES005512 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 1991 to 2011
$5.8M
Hypoxia Signaling, Chromatin Remodeling and Nickel CarcinogenesisR01ES014454 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI COSTA, MAX · 2006 to 2009
$1.7M
NCI NIH HHS CA16087NCI NIH HHS P30 CA016087NIEHS NIH HHS ES000260NIEHS NIH HHS ES005512NIEHS NIH HHS ES014454NIEHS NIH HHS P30 ES000260NIEHS NIH HHS R01 ES005512NIEHS NIH HHS R01 ES014454NIEHS NIH HHS T32 ES007324NIEHS NIH HHS T32 ES07324-08PHS HHS T32 NIEHS 007267-16
6 · The paper itself

Abstract

We have used Saccharomyces cerevisiae to identify toxicologically important proteins and pathways involved in arsenic-induced toxicity and carcinogenicity in humans. We performed a systemic screen of the complete set of 4733 haploid S. cerevisiae single-gene-deletion mutants to identify those that have decreased or increased growth, relative to wild type, after exposure to sodium arsenite (NaAsO(2)). IC(50) values for all mutants were determined to further validate our results. Ultimately we identified 248 mutants sensitive to arsenite and 5 mutants resistant to arsenite exposure. We analyzed the proteins corresponding to arsenite-sensitive mutants and determined that they belonged to functional categories that include protein binding, phosphate metabolism, vacuolar/lysosomal transport, protein targeting, sorting, and translocation, cell growth/morphogenesis, cell polarity and filament formation. Furthermore, these data were mapped onto a protein interactome to identify arsenite-toxicity-modulating networks. These networks are associated with the cytoskeleton, ubiquitination, histone acetylation and the MAPK signaling pathway. Our studies have potential implications for understanding toxicity and carcinogenesis in arsenic-induced human conditions, such as cancer and aging.

Indexed as

Genome, FungalArsenitesDrug Resistance, FungalGene DeletionGene Expression Regulation, FungalGene Regulatory NetworksHumansInhibitory Concentration 50Microbial Sensitivity TestsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSodium CompoundsArsenitesSaccharomyces cerevisiae Proteinssodium arseniteSodium Compounds

Identifiers

PMID19631266
PMCPMC2763962
OpenAlexW1964352171

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.